Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5069g00001 ATGGCTGCTACTCCAAAACCCGTCAAATCTTTCACTCCCAAGAAATCCTCCGACACCTCAATTTCAGTTTCCAAAGTGAGGGTTATCGTCAGGGTCAGACCCTTCCTCGCACACGAAACCTCAACAGAAAACGGCGACCCCGTTTCGGGCATCTCCGTCTTGGACAGAGATTCCGAGTTTCCCCAGGAAGAGGTTGCTGTTTATCTCAAAGACCCAGAAACCAGCCGGAATGAGTGCTACCGGTTGGACTCTTTCTTTGGGCAAGAAGATGACAATGTGGGACAGATATTCGGCAGAGAAGTTAGCCCCTTGATTCCGGGAATGTTCAGTGGATCCAACGCCACGGTGTTTGCTTATGGAGCTACTGGCAGTGGGAAGACATACACCATGCAGGGAACCAAGGAACAACCTGGCTTGATGCCACTGGCAATGTCTATGATCCTGTCTATTTGCCAGAGCACTCGCAGCACAGCACATATCTCATATTATGAGGTCTACATGGACCGATGCTACGACCTTTTGGAGCTCAAAGCAAACGAGATTTCAGTTTGGGATGGCAAAGATGGGCAGATTCACCTCCGGGGACTGTCTCAGGTTCCTATAAACACAATGTCTGAATTTCAAGATGTTTTCTTATGTGGAGTTCAGAGACGCAAAGTTGCCCACACAGGTCTTAATGATGTCTCTAGTAGGAGTCATGGAGTGCTTGTGATATCTGTGTCCACTCCTTCGGCTGATGGAACCGGAACTGTTGTATGTGGGAAGTTGAATCTCATAGACTTGGCAGGTAATGAAGACAACCGAAGGACCTGCAATGAAGGGATTCGTCTCCAAGAGAGTGCAAAGATAAACCAGTCCTTGTTTGCACTGTCAAATGTGGTATATGCATTGAACAACAATAAACCTAGAGTACCCTACCGAGAAAGCAAATTGACCCGTATATTGCAGGACTCTCTAGGGGGAACAAGTCGTGCACTGATGGTTGCTTGCCTGAATCCAAGAGAATACCAGGAATCTGTTTATACTGTAAGTTTAGCTGCTCGATCAAGGCATGTCACAAATTTTGTAACTTCAGCTCACAAACAAGAGACCCCGAAAGTTAAAGTTGACATGGAAAAAAAATTGAGAGCTTGGTTAGAATCAAAAGGAAAAACAAAGAGTACACAAAGACTTGGGCCATTTAATTCTCCTCTTCTGAAGAAAACTCCCGTTTCCATCATTACACCTGCCAAGAGATCCATTGCCTTTAACAGTTCAGTGAAGGGGGGAAGAAGTGCCATCAACTTAGATACTAAACGTACTAATGAAAGCGCCTTTGCTGTGGCTTTTGGAAATTTACTAGATGTTGAAGGTTCAATTGGTTCATGCATGGAGAATGCACCATCAGTTGTCAAGGACAATGATAACAAAGAGACTGAGCATGATGCTAATAAGGCTGCATGGGAATCATACAAAAATCTACCTGCCGAGCCATTGAGAAAGGGAGTGAACTCAACTACTAATGAGAGTTATGATGCAGCACAGAGTCCTTTAAGAAAAGCCCTTTCCCCCATCAACATCAATGCTGTTCAAAAACCCCTTGAGGCATTGTCTTTCACACAAACACCTTTTCTGGCAACCTGCTCCACTAATAAAGGGATACAAAAGGATGACACTCCACTTGGAAAATTCAGCACACGAAGTTCTACACTTAAGAACTGTCTAGTTCAAGAATACCTCGATTTCTTGAATAATGCTAGCAGAGAGGAACTACTTGAGTTAAAGGGCATTGGAGAGAAAATGGCGGAATACATTATAGACCTCAGAGAAGAAACTCTTCTTAAATCGTTAAATGATTTGGAGAAGATAGGCCTCTCTACCAAGCAGGCCCATAACCTATTCACTAAAGCTGCAAAAAAATTATTTGAAGAATAATCTGAAGATTCAATACTCAGTTGA 1938 0.437 MAATPKPVKSFTPKKSSDTSISVSKVRVIVRVRPFLAHETSTENGDPVSGISVLDRDSEFPQEEVAVYLKDPETSRNECYRLDSFFGQEDDNVGQIFGREVSPLIPGMFSGSNATVFAYGATGSGKTYTMQGTKEQPGLMPLAMSMILSICQSTRSTAHISYYEVYMDRCYDLLELKANEISVWDGKDGQIHLRGLSQVPINTMSEFQDVFLCGVQRRKVAHTGLNDVSSRSHGVLVISVSTPSADGTGTVVCGKLNLIDLAGNEDNRRTCNEGIRLQESAKINQSLFALSNVVYALNNNKPRVPYRESKLTRILQDSLGGTSRALMVACLNPREYQESVYTVSLAARSRHVTNFVTSAHKQETPKVKVDMEKKLRAWLESKGKTKSTQRLGPFNSPLLKKTPVSIITPAKRSIAFNSSVKGGRSAINLDTKRTNESAFAVAFGNLLDVEGSIGSCMENAPSVVKDNDNKETEHDANKAAWESYKNLPAEPLRKGVNSTTNESYDAAQSPLRKALSPININAVQKPLEALSFTQTPFLATCSTNKGIQKDDTPLGKFSTRSSTLKNCLVQEYLDFLNNASREELLELKGIGEKMAEYIIDLREETLLKSLNDLEKIGLSTKQAHNLFTKAAKKLFEEXSEDSILS 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5069g00001 645 Gene3D Kinesin motor domain 22 392 IPR036961 -
Vium5069g00001 645 PRINTS Kinesin heavy chain signature 255 273 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium5069g00001 645 PRINTS Kinesin heavy chain signature 111 132 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium5069g00001 645 PRINTS Kinesin heavy chain signature 304 325 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium5069g00001 645 PRINTS Kinesin heavy chain signature 223 240 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium5069g00001 645 FunFam Kinesin-like protein KIN-10C 562 634 - -
Vium5069g00001 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 377 IPR027417 -
Vium5069g00001 645 FunFam Kinesin-like protein 22 392 - -
Vium5069g00001 645 CDD KISc_KID_like 26 350 - -
Vium5069g00001 645 Gene3D - 562 633 - -
Vium5069g00001 645 SUPERFAMILY RuvA domain 2-like 569 616 IPR010994 -
Vium5069g00001 645 Pfam Helix-hairpin-helix motif 576 598 IPR000445 GO:0003677
Vium5069g00001 645 Pfam Kinesin motor domain 31 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium5069g00001 645 ProSiteProfiles Kinesin motor domain profile. 25 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium5069g00001 645 ProSitePatterns Kinesin motor domain signature. 254 265 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium5069g00001 645 SMART kinesin_4 23 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium5069g00001 645 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 24 380 IPR027640 GO:0003777|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5069g00001 Vium-Chr5069 4691 9227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5069g00001 25 384 Calmodulin-binding Proteins AT5G65930 32.973 1.33e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5069g00001 K10403 - gmx:100804591 1077.39