Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5067g00003 ATGAAGGTTTCATTATCAACACCATTCACTGGCATACCATTGTGGGTTTTGATTGTGGCAGTTTCAATATCAGCATTCATTGTTGTGATCTGCATCATTTTGTGCTTTTGCTTCGTATATTATCCTCGTAAAAAACCATACAAACCTCGTTTTTCTTTACCTAAATCAATAGCATGCAAGCACCACAATGATGATTTTAGCTCTTCCTCTCTTGACAAGAGGTTACTATCAGCATCAGGGAATGTCTCAGAACATAGTATGAACTTTCAGAAGTTGTCATCGGGTTATTACAATCATGAGTTGTTCATACCTGGTCAGTTTTATCCAATGGGATATGACAGTTCAAATGATAGGTATTTGGAAGGTTTGGGATCAAAAGGTAAGTTATGTTGCACAGTCAATGATAAAAGTAAAGGGTGGAACTTTAGCCTTAAGGAGATAGAGGATGCTACCAATGGATTTTCTAAAGAAAATGAGCTTGGAAGTGGAGATAATGGGATTGTATATCTTGGTTTGTTACCAAGTAATTATCAAGTGCTAGTGAAGAGGCTAGTATGTAAAAGTCACCAACCTGAGGAAATTTTTGCATTCCAAATGGAAGCAATTGGACTTGCAAAGCACAATAACCTGGTCAAATTACTTGGATATTGTGCAGAGGGTGCTTACAGGATGTCAGTTTCTGAATATGTAGAACATGAAAGTCTGCACCACTGGCTTCATGAATTTCCTGCACAAATCAGCCCTCTAACATGGGATATAAGAAAGAACATAATTCACGGTGTGGCAAAAGGACTGGCATACCTTCATGATGAAGTTAAACCAAAGATTCTCCATGGCAGCTTAAAAACTAGTAATATTTTGCTGGACCACAAATGGAATCCAAAAATATCTGATTTTGGCCTTGTTGAGGTTCTCAGTTCCAAAAGGAGTCACACTATACTTGAAGTGGAAGCATTGGGAATTCATGTTATCTATGACTTTTAA 984 0.375 MKVSLSTPFTGIPLWVLIVAVSISAFIVVICIILCFCFVYYPRKKPYKPRFSLPKSIACKHHNDDFSSSSLDKRLLSASGNVSEHSMNFQKLSSGYYNHELFIPGQFYPMGYDSSNDRYLEGLGSKGKLCCTVNDKSKGWNFSLKEIEDATNGFSKENELGSGDNGIVYLGLLPSNYQVLVKRLVCKSHQPEEIFAFQMEAIGLAKHNNLVKLLGYCAEGAYRMSVSEYVEHESLHHWLHEFPAQISPLTWDIRKNIIHGVAKGLAYLHDEVKPKILHGSLKTSNILLDHKWNPKISDFGLVEVLSSKRSHTILEVEALGIHVIYDF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5067g00003 327 ProSiteProfiles Protein kinase domain profile. 154 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5067g00003 327 Gene3D Transferase(Phosphotransferase) domain 1 230 319 - -
Vium5067g00003 327 PANTHER OS01G0323000 PROTEIN 3 316 - -
Vium5067g00003 327 ProSitePatterns Protein kinases ATP-binding region signature. 160 187 IPR017441 GO:0005524
Vium5067g00003 327 Gene3D Phosphorylase Kinase; domain 1 125 229 - -
Vium5067g00003 327 SUPERFAMILY Protein kinase-like (PK-like) 140 311 IPR011009 -
Vium5067g00003 327 Pfam Protein kinase domain 155 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5067g00003 327 FunFam Os07g0541700 protein 230 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5067g00003 Vium-Chr5067 49234 51772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5067g00003 142 312 Receptor kinase-like Gene Family AT4G04570 43.275 1.66e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium5067g00003 Pkinase 7.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5067g00003 - - vum:124839878 655.595