Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5066g00001 ATGCCAAACACAAGAAATCTGAGGCACCTCAACCTCAACATGTGCTGCTCAAACTCAGCTACTCCTGACTCAGAAACTCCTCCATTGAGCCCCATTACTACTTCCTCACATCACAACACTCACTCTGCATCTCCTTCTTCCATTATGATAAAGAATTTCAACTCTATCTATGACCCTACCTTAACCTCTAACAACTCTTTCAGCTCCACTTTCTTCTCCACCACCACCACCACCACCACCTTCTTCGAACCAGAACCTGAACCTCAACCCGCCGACTTCGCCACCGCTTTCGCCTCCCAGAGGTTCTTCTTCTCCTCTCCCGGCCACTCAAACTCCCTTCTTCAATACACCAACAAAACTACTCAACACCACTCAGCGTCGCTCAGAGAAGATGCTGCTCATGTTGACAAGATCAAGATGACTAAGAAGGTCTTGTTCAAGGGGAGCGTGGCCGTGGCGACGTACTCGCCGGACCCTTACGTCGATTTCCGGCGGTCGATGCAGGAGATGGTGGAGGCGCGTCCGGAGCTGATGGACGTGAAGTCCAACTGGAATGTGTTGCACGAGCTTCTTCTGTGTTATCTTGCCCTCAACCCAAAGAACACCCACAAGTTCATTCTTGGTGCTTTTGCTGATCTCCTCGTTAGCCTCATGTCTTTCTAG 663 0.5023 MPNTRNLRHLNLNMCCSNSATPDSETPPLSPITTSSHHNTHSASPSSIMIKNFNSIYDPTLTSNNSFSSTFFSTTTTTTTFFEPEPEPQPADFATAFASQRFFFSSPGHSNSLLQYTNKTTQHHSASLREDAAHVDKIKMTKKVLFKGSVAVATYSPDPYVDFRRSMQEMVEARPELMDVKSNWNVLHELLLCYLALNPKNTHKFILGAFADLLVSLMSF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5066g00001 220 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 46 217 IPR038933 GO:0045892
Vium5066g00001 220 NCBIfam uncharacterized plant-specific domain TIGR01568 150 218 IPR006458 -
Vium5066g00001 220 Pfam Transcriptional repressor, ovate 156 217 IPR006458 -
Vium5066g00001 220 ProSiteProfiles OVATE domain profile. 152 216 IPR006458 -
Vium5066g00001 220 MobiDBLite consensus disorder prediction 18 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5066g00001 Vium-Chr5066 8984 9886 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium5066g00001 Ovate 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5066g00001 - - gmx:102660213 301.597