LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium505g00003	ATGGCGGTTGCGGGTGTGCATAATGTGACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCACCTGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCGTCTTCGGTCATGCAAATGTGGAGAGAGATTGAGGATGAGCAGGCAGTAAGACCAGTTCAAGGAAGACCTGGGGAGGTTTTACTTCAACAAACGAGTGATGAGGTGGTTGTGGACTCCTCGCAGGAAAATATGCCATATAGCAACCAGAGAGAAGGACGTGTGATAGAAGATGCAGGTTTGGGAGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACAAGAGGAATTGAATAATTCTAGCCACGAAAACTCCTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAGTGGATGAATAGTGGTTCTAGGGATCGTGCATCGAATAATTCCCAAGGAAACAGAGGAGAATGGCGCGGGGAAACTGAGCAGGAAAGGGGCGGGGAAACTGATCAGGAAGGAGTGAGTATCATAAGGGAGTGGGTGCAGACGAGTAGCCCACAGAGAGGTGTTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAACTGGTACCCAAATTGAATGTGTTCGTGATGGATTTATTAATCAGAACGACGGTCAAGCTGAGCATGCACGGAGGGGAATCCGTAAATTATGTGGCCGACAGGTGCTGCTTGATATGCTTAAGAAGGCCCAGATGGAAAGACAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGTTGTATCTCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGGTAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAGAAGCAGACTGTATCAGGTCTAAGAGAAGGATTCTTTTTCAGAAAGGACAGTTTTGGTTGCAGTCAAGCAACCAGTAACCTATCTGATACCTCTTCCGAGAGTGATATTGATAATGCAATTGAACAAACTGGAGCTAGCAGTTCACAAGCCGTCCCAACTGTACATTCTGAACAATCCCGGCCTATTAACAATGGTAGTGACGGACTTGAGATACCATGTGATCAGATCTGTTCACAAGGAACCCCTTGTGAGAAATTAGACTGGCAAGGCTCTGCCGCTCATATAGAAACAATTGATCGGGAATCATCTTCGTGTATCAGAGTTGAAAGAGGAGATGACACTGGACAAACTGTTGCTACGATGCCAGCTGAAGATTCTTCTAATGACCTTTCCCAACAAAGTTTGCAAATTGAAGATATAGAGGATGACAACATACAAGAGTTAAGCGAGGTACCTACTGAGCAATCTCAGTGGGGAGATATAACTAATGACGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTTGGTGATGTGAATTTGATTGAATCTATTGCTCTGGAAGTAGAACAACAGGAAGAAGTTATTATTGAAAATGACGGAAGTGACTGGCATCAAAGTGTGGATGTTCATCAGCTCAGTAATACTACAAATGAATGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGCGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTATAGCGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCGTATGTTGAAAGGCAAGGTAACGCTCATGTTGAATGGGAACTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCTGGACAAGAGACTAGGGATCCAGTTGTTGGTCCTCAGGGTACTGTTAATAGCTCACTTGACCACCGTCCCTTGCCACCAACACCTCCGCCTCAGCCTTTATGGGATCGGCACTCTCGCCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCCTAGGAATTGTGCGTTCATTTGCGGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTAAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTGGAAGCCTGTATGGATATGCAGCTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGGTTCATCAGGAACACATGACCGTGTCTCACCAGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGAGTTTGTTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCATATGTGCACATGTTCAAAATGTGCAAATGATTTGCACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAG	2577	0.442	MAVAGVHNVTALESTFLRESLSQSPGRQGDGGRGGTRSSSVMQMWREIEDEQAVRPVQGRPGEVLLQQTSDEVVVDSSQENMPYSNQREGRVIEDAGLGENDSETWSQSQNEFHDEQEELNNSSHENSSDFGEVERERVRQIFREWMNSGSRDRASNNSQGNRGEWRGETEQERGGETDQEGVSIIREWVQTSSPQRGVSSGENREEQSSETGTQIECVRDGFINQNDGQAEHARRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSIGNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDSFGCSQATSNLSDTSSESDIDNAIEQTGASSSQAVPTVHSEQSRPINNGSDGLEIPCDQICSQGTPCEKLDWQGSAAHIETIDRESSSCIRVERGDDTGQTVATMPAEDSSNDLSQQSLQIEDIEDDNIQELSEVPTEQSQWGDITNDESNLSNQDDRVYSNIVGDVNLIESIALEVEQQEEVIIENDGSDWHQSVDVHQLSNTTNEWPQNILGSEDGENSRMQEQEAPEAWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGNAHVEWELQETTPSSPLAEQDSGQETRDPVVGPQGTVNSSLDHRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTHDRVSPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	109	135	-	-
	Vium505g00003	858	SUPERFAMILY	RING/U-box	796	851	-	-
	Vium505g00003	858	ProSiteProfiles	Zinc finger RING-type profile.	806	845	IPR001841	-
	Vium505g00003	858	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	1	858	-	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	70	86	-	-
	Vium505g00003	858	Pfam	Zinc finger, C3HC4 type (RING finger)	804	850	-	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	1	135	-	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	648	702	-	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	185	216	-	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	147	216	-	-
	Vium505g00003	858	Coils	Coil	734	761	-	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	13	45	-	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	150	165	-	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	166	181	-	-
	Vium505g00003	858	CDD	mRING-HC-C3HC5_NEU1	806	855	-	-
	Vium505g00003	858	Coils	Coil	436	456	-	-
	Vium505g00003	858	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	784	856	IPR013083	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	356	376	-	-
	Vium505g00003	858	MobiDBLite	consensus disorder prediction	648	681	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium505g00003	Vium-Chr505	27912	33236	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium505g00003	806	852	C3H Transcription Factor Family	AT3G06140	38.298	4.13e-06	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium505g00003	-		-	var:108334224	1374.76