LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium505g00002	ATGGCGGTTGCGGGTGTGCATAATGTGACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCACCTGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCGTCTTCGGTCATGCAAATGTGGAGAGAGATTGAGGATGAGCAGGCAGTAAGACCAGTTCAAGGAAGACCTGGGGAGGTTTTACTTCAACAAACGAGTGATGAGGTGGTTGTGGACTCCTCGCAGGAAAATATGCCATATAGCAACCAGAGAGAAGGACGTGTGATAGAAGATGCAGGTTTGGGAGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACAAGAGGAATTGAATAATTCTAGCCACGAAAACTCCTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAGTGGATGAATAGTGGTTCTAGGGATCGTGCATCGAATAATTCCCAAGGAAACAGAGGAGAATGGCGCGGGGAAACTGAGCAGGAAAGGGGCGGGGAAACTGATCAGGAAGGAGTGAGTATCATAAGGGAGTGGGTGCAGACGAGTAGCCCACAGAGAGGTGTTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAACTGGTACCCAAATTGAATGTGTTCGTGATGGATTTATTAATCAGAACGACGGTCAAGCTGAGCATGCACGGAGGGGAATCCGTAAATTATGTGGCCGACAGGTGCTGCTTGATATGCTTAAGAAGGCCCAGATGGAAAGACAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGTTGTATCTCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGGTAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAGAAGCAGACTGTATCAGGTCTAAGAGAAGGATTCTTTTTCAGAAAGGACAGTTTTGGTTGCAGTCAAGCAACCAGTAACCTATCTGATACCTCTTCCGAGAGTGATATTGATAATGCAATTGAACAAACTGGAGCTAGCAGTTCACAAGCCGTCCCAACTGTACATTCTGAACAATCCCGGCCTATTAACAATGGTAGTGACGGACTTGAGATACCATGTGATCAGATCTGTTCACAAGGAACCCCTTGTGAGAAATTAGACTGGCAAGGCTCTGCCGCTCATATAGAAACAATTGATCGGGAATCATCTTCGTGTATCAGAGTTGAAAGAGGAGATGACACTGGACAAACTGTTGCTACGATGCCAGCTGAAGATTCTTCTAATGACCTTTCCCAACAAAGTTTGCAAATTGAAGATATAGAGGATGACAACATACAAGAGTTAAGCGAGGTACCTACTGAGCAATCTCAGTGGGGAGATATAACTAATGACGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTTGGTGATGTGAATTTGATTGAATCTATTGCTCTGGAAGTAGAACAACAGGAAGAAGTTATTATTGAAAATGACGGAAGTGACTGGCATCAAAGTGTGGATGTTCATCAGCTCAGTAATACTACAAATGAATGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGCGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTATAGCGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCGTATGTTGAAAGGCAAGGTAACGCTCATGTTGAATGGGAACTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCTGGACAAGAGACTAGGGATCCAGTTGTTGGTCCTCAGGGTACTGTTAATAGCTCACTTGACCACCGTCCCTTGCCACCAACACCTCCGCCTCAGCCTTTATGGGATCGGCACTCTCGCCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCCTAGGAATTGAGTGGGATATTGTTAATGACTTAAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTGGAAGCCTGTATGGATATGCAGCTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGGTTCATCAGGAACACATGACCGTGTCTCACCAGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGAGTTTGTTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCATATGTGCACATGTTCAAAATGTGCAAATGATTTGCACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAG	2535	0.4422	MAVAGVHNVTALESTFLRESLSQSPGRQGDGGRGGTRSSSVMQMWREIEDEQAVRPVQGRPGEVLLQQTSDEVVVDSSQENMPYSNQREGRVIEDAGLGENDSETWSQSQNEFHDEQEELNNSSHENSSDFGEVERERVRQIFREWMNSGSRDRASNNSQGNRGEWRGETEQERGGETDQEGVSIIREWVQTSSPQRGVSSGENREEQSSETGTQIECVRDGFINQNDGQAEHARRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSIGNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDSFGCSQATSNLSDTSSESDIDNAIEQTGASSSQAVPTVHSEQSRPINNGSDGLEIPCDQICSQGTPCEKLDWQGSAAHIETIDRESSSCIRVERGDDTGQTVATMPAEDSSNDLSQQSLQIEDIEDDNIQELSEVPTEQSQWGDITNDESNLSNQDDRVYSNIVGDVNLIESIALEVEQQEEVIIENDGSDWHQSVDVHQLSNTTNEWPQNILGSEDGENSRMQEQEAPEAWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGNAHVEWELQETTPSSPLAEQDSGQETRDPVVGPQGTVNSSLDHRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTHDRVSPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ	844

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium505g00002	844	Coils	Coil	720	747	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	109	135	-	-
	Vium505g00002	844	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	770	842	IPR013083	-
	Vium505g00002	844	Pfam	Zinc finger, C3HC4 type (RING finger)	790	836	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	70	86	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	1	135	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	648	702	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	185	216	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	147	216	-	-
	Vium505g00002	844	ProSiteProfiles	Zinc finger RING-type profile.	792	831	IPR001841	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	13	45	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	150	165	-	-
	Vium505g00002	844	SUPERFAMILY	RING/U-box	791	837	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	166	181	-	-
	Vium505g00002	844	Coils	Coil	436	456	-	-
	Vium505g00002	844	CDD	mRING-HC-C3HC5_NEU1	792	841	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	356	376	-	-
	Vium505g00002	844	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	1	844	-	-
	Vium505g00002	844	MobiDBLite	consensus disorder prediction	648	681	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium505g00002	Vium-Chr505	27912	33236	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium505g00002	792	838	C3H Transcription Factor Family	AT3G06140	38.298	4.22e-06	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium505g00002	-		-	var:108334224	1335.86