Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5052g00003 ATGGAAGGAAACTATCTGAACAGAAATAGTACTACTACTCCACAGAGAGAAGATAGCTTTGGCTTTGAGGAGCATACATGGGGAAATTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGAGGACACATGAATGTTCACAGAAGGGATAGGGCTAGATTGAGATCATCCTTGTCTTCATGGGTTTCTGAATGCCCTAAACCTAACCCTAGCACTAAACCTAATAACCCAACTCTTCTTCCAACATCTTCTTCACCATCTCCTTTATCTGATCAGTCTTTGAACTGTCCACATCCTTCTCCACTTTGCACTCCTTGTCTCACTTTGTCTTCTGCACCACCCTTCCCAGGTTCTACCAGTGGAGACAAGAAACCAAGACTCACACCTTCTCATTCTCAGTCTCCTCTTTTGAGTCCTCAAAGCTGCGAAATTAAGATGATGATGATGACAAGTAGCAACACAAGGAATGATGAGGAAATGAAGGGCTGTGTGGAGGAGGAGGAGGAGCACAAGGGTTTCAAGGACAATGAGCAAAACATTACTTTGGAATTAGGAATAGGGTTGATTAAACACCAAGAGGAGAAGTTAGACTTGGAGCTTCGACTTGGGCATTTCTAG 651 0.4363 MEGNYLNRNSTTTPQREDSFGFEEHTWGNSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNNPTLLPTSSSPSPLSDQSLNCPHPSPLCTPCLTLSSAPPFPGSTSGDKKPRLTPSHSQSPLLSPQSCEIKMMMMTSSNTRNDEEMKGCVEEEEEHKGFKDNEQNITLELGIGLIKHQEEKLDLELRLGHF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5052g00003 216 SMART c2h2final6 36 58 IPR013087 -
Vium5052g00003 216 Pfam C2H2-type zinc finger 36 60 - -
Vium5052g00003 216 MobiDBLite consensus disorder prediction 1 17 - -
Vium5052g00003 216 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Vium5052g00003 216 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Vium5052g00003 216 Gene3D Classic Zinc Finger 24 80 - -
Vium5052g00003 216 PANTHER OS07G0101800 PROTEIN 15 215 - -
Vium5052g00003 216 MobiDBLite consensus disorder prediction 87 105 - -
Vium5052g00003 216 MobiDBLite consensus disorder prediction 125 151 - -
Vium5052g00003 216 MobiDBLite consensus disorder prediction 70 105 - -
Vium5052g00003 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vium5052g00003 216 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5052g00003 Vium-Chr5052 20615 21882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5052g00003 24 214 C2H2 Transcription Factor Family AT3G23130 39.062 4.63e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium5052g00003 zf-C2H2_6 5.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5052g00003 - - gmx:102660985 284.263