Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5049g00002 ATGATGCTACAGTCCTACTTTTCAACAATTCCAATTTTCCTACTCCTGCTAGTGTTTCCTCAAACTAAAGCTGATCTACACTCAGAAAAGCAAGCTCTTCTTGATTTTGCTGCTGCACTTCATCATGGTCCAAGAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCATGGGTGGGAGTTACATGTAGTTATGATGGGTCCCATGTGCTTTCTGTGAGGCTTCCAGGTGTGGGACTGCGCGGTTATGTCCCACCAAACACACTTGGTAAGCTTAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACAGCTTGAGGGGGAACCTTCCAAGTGACCTACTTTCCCTTCCTTCTCTGCGCTTTGTATATCTCCAACACAACAACTTCTCAGGTCACATTCCTGATTCACTGCCACCCCGGCTTATCTTTCTTGATCTGTCCTATAACTCTTTCACAGGTCAAATTCCAGACTCAATCCAAAACTTGACACATCTAATAGGACTCAACCTCCAAAACAACTCTCTCTCAGGATCCATTCCTAATGTTAACCTCCCTACCCTTAAGATTTTGGATTTAAGCTTCAACTACTTGAATGGTTCTATTCCTTCATGTTTCCGTAAGTTTACTGGCTCCTCATTTAGAGGGAATATGATGTTATGTGGAGCACCTTTGAAACATTGTTCTTCAGATTCCACTTCTACCACATTGTCTCCATCAACAGTCTCTCAAAGACCAAGTGATCCATCAAACAGGAAAATGAACAAGGGGGCAAAAATAGCAATTATTTTGGGGGTTGTCACTTCGCTGTTTCTTCCAGGTCTTATGGTAGTGTTTTGCTGTTTCAAGAAAAAAGTTGTTGAACAAAATGTTGCACCTGCAGAGAAAGGTCAGAAGCTTAAGGAGGACTTTGGTAGTGGTGTGCAAGAACCTGAGAGAAACAAGCTTGTATTCTTTGAAGGTTGTTCTTATAATTTTGATCTGGAGGACTTGTTAAGAGCTTCAGCTGAAGTGCTTGGGAAGGGAAGTTGCGGAACGACATATAAAGCCATCTTGGAGGATGGAACAACAGTGGTTGTGAAGAGGTTAAAAGAGGTGGCAATGGGTAAAAAAGAATTTGAACAGCAAATGGAGATTGTTCAAAGACTTGATCATCACCCAAATGTGATTCCCCTCCGTGCTTACTACTACTCCAAAGATGAAAAATTAATGGTTTACGACTACTGCACAGCCGGAAGTTTTTCCAAGTTACTTCATGGAACCAGGGAAACTGGACGAGCTCCACTAGATTGGGATTCAAGATTGAAGATTGTGGTTGGAGCTGCAAGGGGTGTTTGTCATATTCACTTAGCCAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCTAATGTGATTCTCACAATAGATCTCCAGGGCTGTATATCAGATTTTGGCCTAACTCCCCTGACAAATTTCTGTGCCTCCTCTAGAAGTCCAGGCTATGGAGCACCTGAAGTTATTGAACAAAGAAAGTCCACCCAAAAATCTGATGTGTACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGCAAAACACCAGTTCAGTATTCAGGGCATGATGAAGAGGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGTTAATGAGGTATCCAAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGTGTAGCAGTGATGCCTGACTCAAGACCCTCAATGGTGGAAGTTGTTAGAACAATAGAAGAAATTAGAGCTTGCATTTATTAA 1824 0.4216 MMLQSYFSTIPIFLLLLVFPQTKADLHSEKQALLDFAAALHHGPRVNWNSSTSICTSWVGVTCSYDGSHVLSVRLPGVGLRGYVPPNTLGKLNGLISLSLRSNSLRGNLPSDLLSLPSLRFVYLQHNNFSGHIPDSLPPRLIFLDLSYNSFTGQIPDSIQNLTHLIGLNLQNNSLSGSIPNVNLPTLKILDLSFNYLNGSIPSCFRKFTGSSFRGNMMLCGAPLKHCSSDSTSTTLSPSTVSQRPSDPSNRKMNKGAKIAIILGVVTSLFLPGLMVVFCCFKKKVVEQNVAPAEKGQKLKEDFGSGVQEPERNKLVFFEGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEDGTTVVVKRLKEVAMGKKEFEQQMEIVQRLDHHPNVIPLRAYYYSKDEKLMVYDYCTAGSFSKLLHGTRETGRAPLDWDSRLKIVVGAARGVCHIHLANGRKLVHGNIKSSNVILTIDLQGCISDFGLTPLTNFCASSRSPGYGAPEVIEQRKSTQKSDVYSFGVLLLEMLTGKTPVQYSGHDEEVDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAVMPDSRPSMVEVVRTIEEIRACIY 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5049g00002 607 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 408 605 - -
Vium5049g00002 607 SUPERFAMILY Protein kinase-like (PK-like) 336 599 IPR011009 -
Vium5049g00002 607 Gene3D Ribonuclease Inhibitor 27 138 IPR032675 -
Vium5049g00002 607 FunFam pollen receptor-like kinase 1 300 407 - -
Vium5049g00002 607 Gene3D Ribonuclease Inhibitor 139 229 IPR032675 -
Vium5049g00002 607 PANTHER OS05G0588300 PROTEIN 12 603 - -
Vium5049g00002 607 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Vium5049g00002 607 SUPERFAMILY L domain-like 44 225 - -
Vium5049g00002 607 Gene3D Transferase(Phosphotransferase) domain 1 409 605 - -
Vium5049g00002 607 FunFam Probable inactive receptor kinase RLK902 26 183 - -
Vium5049g00002 607 MobiDBLite consensus disorder prediction 230 252 - -
Vium5049g00002 607 Pfam Protein kinase domain 335 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5049g00002 607 MobiDBLite consensus disorder prediction 230 250 - -
Vium5049g00002 607 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Vium5049g00002 607 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515
Vium5049g00002 607 Gene3D Phosphorylase Kinase; domain 1 299 407 - -
Vium5049g00002 607 ProSiteProfiles Protein kinase domain profile. 332 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5049g00002 Vium-Chr5049 26576 30191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5049g00002 24 603 Receptor kinase-like Gene Family AT5G58300 61.290 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium5049g00002 Pkinase 5.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5049g00002 - - var:108321341 1163.29