Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5044g00006 ATGTTGTGTGCTTGTTCGGGGGAGCAATTCAAGTTTGAAGAGGCACCACAGTCACCTGAGTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGTCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAGACGCAAGTTGAAGAAGCTGAATCTACTCTAAAAGAAACACTCTCATTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGGCTAGAATACCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTTTTTGAAGGTATAGACATAAGGGTTTTGACCCCAAGGATGATCAAGGCAATAGCTGAAAGAACCAAGCAAAGAAAACCACGGTCAAAGGTGGATAATGTGCTTCCTAATGTAATGTCAATGCATTCAGTAAGCCTGCTTCTAGAGGCAATTTTGCTTAAATCCAAATCCTTAGAAGAACTTGGAAGATACACCGAGGCTGCGAAAGAGTGCAGAATTATTGTGGATACAGTAGAATCTGCTCTTCCAAATGGAATGCCTGAGGGTATCGGTGAAGATTGTAAGTTGCAAGAAATGTTCCACATAGCATTGGAGTTGCTTCCAAATCTATGGATCAAATCTGGTTTTCTAGACGAAGCTGTCACTGCTTACCGGAGGGCTCTAATCAAGCCATGGAATTTGGAGCCGTGGAGATTGGCCAGGGTTCAAAAAGATTTGGCTACCACACTACTCTATGGTGGTGCTGAAGCAAACATACCCTCTCAGCTGCAAGTGAATGGTTTAACAACACCTATGAGTGGTACTGAAGAAGCCATACTTTTGCTGTTAATACTCTCTGGAAAGATGGCACTTCAGGAAATAGACTGGGACCCTGAAATAATGGATCATCTTACATTTTCTCTTTCAGTTACTGGAATGTTTGAATCATTGGCAGATAACGTAGAGAAGATCCTTCCGGGGGTTTATGATCGGGCAGAGAGGTGGCATTTTCTTGCTCTTTGTTACAGTGCAGCAGGACAGAATGAAGTGGCCTTGAACCTTTTGAGGAAAGCTTGTGGTAGTTCTGAAGCCAAGCATAGACCCTATTTTCCTTCATTTTTGTTTGCTGCAAAGCTGTGTTCTTTATGTCCAAACCATGCTCATGAAGGCATCAAATTTTCACAGGAAGTTATTGATCTAGCCAAGCATCAAAATGAGCATTTTCTGGGCGAGGGCCTAAAATTTATGGGCACTTGCCAAGGGGCTTCTGCCAGAGTATCTGTACTAGATTCTGAAAGAATTATATTTCAAAGAGAGTCTTTGTACTTTCTAAATGATGCTGTCGCTCTAAATGGAAATAATGATCCAGAAGTGATACTCAGCCTTGGATTGGAAAATGCAATGCAAAGAAATTTAAATACAGCATATGACAATTTAATGATATACTCTGACATGATGGCTGGCAGCTCAAAAAGAGGTTGGCAGTTGTTAGCACTCATAGTATCAGCGGAACAGAGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGTAGCATAGACCAGTTAGAACTACTGAGACTGAAAGCTATTCTTCAAATTACACAGCAGCAACCCAAGAAAGCAGTAGAGACCTACAGAATCTTGCTAGCAGTAATTGAATCACAAAAGGAGCATTGGCTTCAGGCTAAGGCATTCAGGCATGAGGCATTAAAACAACAGAAGTTGGAAATGGAAGTCTGGCAAGATTTGGCCACCATTTATGTAGATCTTTGCTCCTTTCTAGATGCAAAAGCTTGTGTTGACATGGCTCAGTTGATAGAATTTTTTTCTCCAAGAAGTTGGCATATTACTGGGTTGTTGTTTGAATCTCGGACATTGCATAAGGAGGCCTTAGCTTCCTTCTCAGTCTCATTGTCAATAGAACCGGATTACATTCCCAGCATCATTTCAGCTGCAAAATTAATGCTTAAACTTGGCATGCAATCACTCCCAATCACAAGAAGCTTTTTAATGAATGCTTTGAGATTAGATCCTACAAACCATGAAGCATGGTTTAACCTTGGACTAGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCCGCATATGAGCTGAAGCTTTCAGCTCCAGTGCAAGAATTTGAGTGA 2133 0.4149 MLCACSGEQFKFEEAPQSPESLATRDFSASGLSSRTGDWESKFDETQVEEAESTLKETLSLNYEEARALLGRLEYQRGNFDAALQVFEGIDIRVLTPRMIKAIAERTKQRKPRSKVDNVLPNVMSMHSVSLLLEAILLKSKSLEELGRYTEAAKECRIIVDTVESALPNGMPEGIGEDCKLQEMFHIALELLPNLWIKSGFLDEAVTAYRRALIKPWNLEPWRLARVQKDLATTLLYGGAEANIPSQLQVNGLTTPMSGTEEAILLLLILSGKMALQEIDWDPEIMDHLTFSLSVTGMFESLADNVEKILPGVYDRAERWHFLALCYSAAGQNEVALNLLRKACGSSEAKHRPYFPSFLFAAKLCSLCPNHAHEGIKFSQEVIDLAKHQNEHFLGEGLKFMGTCQGASARVSVLDSERIIFQRESLYFLNDAVALNGNNDPEVILSLGLENAMQRNLNTAYDNLMIYSDMMAGSSKRGWQLLALIVSAEQRFKDAETIVDFALDEAGSIDQLELLRLKAILQITQQQPKKAVETYRILLAVIESQKEHWLQAKAFRHEALKQQKLEMEVWQDLATIYVDLCSFLDAKACVDMAQLIEFFSPRSWHITGLLFESRTLHKEALASFSVSLSIEPDYIPSIISAAKLMLKLGMQSLPITRSFLMNALRLDPTNHEAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQEFE 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5044g00006 710 MobiDBLite consensus disorder prediction 14 42 - -
Vium5044g00006 710 Gene3D Tetratricopeptide repeat domain 480 656 IPR011990 GO:0005515
Vium5044g00006 710 SUPERFAMILY TPR-like 49 344 IPR011990 GO:0005515
Vium5044g00006 710 MobiDBLite consensus disorder prediction 21 37 - -
Vium5044g00006 710 SUPERFAMILY TPR-like 539 702 IPR011990 GO:0005515
Vium5044g00006 710 ProSiteProfiles TPR repeat profile. 671 704 IPR019734 GO:0005515
Vium5044g00006 710 PANTHER PROTEIN NPG1 1 710 IPR043376 -
Vium5044g00006 710 SMART tpr_5 512 545 IPR019734 GO:0005515
Vium5044g00006 710 SMART tpr_5 317 350 IPR019734 GO:0005515
Vium5044g00006 710 SMART tpr_5 601 634 IPR019734 GO:0005515
Vium5044g00006 710 SMART tpr_5 671 704 IPR019734 GO:0005515
Vium5044g00006 710 Gene3D Tetratricopeptide repeat domain 34 344 IPR011990 GO:0005515
Vium5044g00006 710 Gene3D Tetratricopeptide repeat domain 657 706 IPR011990 GO:0005515
Vium5044g00006 710 SUPERFAMILY TPR-like 424 594 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5044g00006 Vium-Chr5044 18507 22628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5044g00006 1 709 Calmodulin-binding Proteins AT1G27460 58.065 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5044g00006 K21843 - gmx:100799086 1248.42