Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium503g00010 | ATGACACAAATCTCATCGACCGTGTACTTGCCTGACTTTGTAAGCACAGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCATTCTCCGCGTCCCCAAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTCCTGAAACTTCTGTTGCCCCACCAAGACCAACCAAGCAACCCAAGACTACAATGAGTACCTGGAGTGCTTACGGCACTGACATGATAGCTCCCAAGGCTGCTTCCTCTTCGTCCTCTAAAATCATCTCCTTTGACAAATCCAGTGCATCTTCTGTTTCTTCCCAACAACTCTACAAACTCGATAATGCAAAACTACTGAAGAAGCCTAAAATTGAAACTGGGTATGGTGAGAACCTGGATTTTTCTGCTGTGGCTTCTCAAAGCTTCTATGACAACAACAGTTTTCTAGACTATGATAAGCAAGAGAAAAAGGCTGCAGTTACAATGGCAAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAGCTCAGCCAAAGGTTCATTGCTCTTTCAGCCTTAGTTCCTGGACTCAAGAAGACGGACAAGGCTACCGTCCTGGAAGATGCTATAAAGTACGTGAAACAATTGCAAGAACGGGTAAAGATTCTGGAGGAACAAAGTGTGGATAAAACAGTTGAATCTGCAATCTTTGTGAAGAGATCTGTTGTCTTCTCCGGAGATGACAGCACCTACTCTGGTGAAAACTCTGACCAATCACTCCCCGAAATCGAAGCAAGAATTTCTGGCAAAGAGGTACTCGTCAGGCTCCACTGCGACAAACACAGTGGACGAACAGCTGCTATACTAAGGGAATTAGAGAACCATAATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTCGGAAATAACACTCTTGACGTAACTATTGTTGCTAAGATGGGGAAGGACTACTGCTTGACTGCAAAAGATCTCATCAGAAGCTTAAGTCAGTGTTTGAGGCAGCTTTCGTAG | 1083 | 0.4478 | MTQISSTVYLPDFVSTGMEDPTLFHQYPMDSFPFQLDDFDFESFSASPKGSSSHKRLSSESTQNSSLTQSPETSVAPPRPTKQPKTTMSTWSAYGTDMIAPKAASSSSSKIISFDKSSASSVSSQQLYKLDNAKLLKKPKIETGYGENLDFSAVASQSFYDNNSFLDYDKQEKKAAVTMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKTDKATVLEDAIKYVKQLQERVKILEEQSVDKTVESAIFVKRSVVFSGDDSTYSGENSDQSLPEIEARISGKEVLVRLHCDKHSGRTAAILRELENHNLTVQSSSFLPFGNNTLDVTIVAKMGKDYCLTAKDLIRSLSQCLRQLS | 360 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium503g00010 | 360 | Gene3D | - | 175 | 248 | IPR036638 | GO:0046983 | |
Vium503g00010 | 360 | Coils | Coil | 223 | 250 | - | - | |
Vium503g00010 | 360 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 184 | 233 | IPR011598 | GO:0046983 | |
Vium503g00010 | 360 | PANTHER | BHLH TRANSCRIPTION FACTOR | 28 | 357 | - | - | |
Vium503g00010 | 360 | Pfam | Helix-loop-helix DNA-binding domain | 187 | 234 | IPR011598 | GO:0046983 | |
Vium503g00010 | 360 | CDD | bHLH_AtNAI1_like | 186 | 258 | - | - | |
Vium503g00010 | 360 | SMART | finulus | 190 | 239 | IPR011598 | GO:0046983 | |
Vium503g00010 | 360 | FunFam | Basic helix-loop-helix family protein | 181 | 250 | - | - | |
Vium503g00010 | 360 | MobiDBLite | consensus disorder prediction | 45 | 88 | - | - | |
Vium503g00010 | 360 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 188 | 244 | IPR036638 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium503g00010 | Vium-Chr503 | 108320 | 111225 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium503g00010 | 167 | 356 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G37850 | 47.179 | 2.06e-53 | 177 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vium503g00010 | HLH | 8.2e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium503g00010 | - | - | gmx:100798011 | 511.531 |