Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium503g00008 ATGACACAAATCTCATCGACCGTGTACTTGCCTGACTTTGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCATTCTCCGCGTCCCCAAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTCCTGAAACTTCTGTTGCCCCACCAAGACCAACCAAGCAACCCAAGACTACAATGAGTACCTGGAGTGCTTACGGCACTGACATGATAGCTCCCAAGGCTGCTTCCTCTTCGTCCTCTAAAATCATCTCCTTTGACAAATCCAGTGCATCTTCTGTTTCTTCCCAACAACTCTACAAACTCGATAATGCAAAACTACTGAAGAAGCCTAAAATTGAAACTGGGTATGGTGAGAACCTGGATTTTTCTGCTGTGGCTTCTCAAAGATTCTATGACAACAACAGTTTTCTAGACTATGATAAGCAAGAGAAAAAGGCTGCAGTTACAATGGCAAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAGCTCAGCCAAAGGTTCATTGCTCTTTCAGCCTTAGTTCCTGGACTCAAGAAGACGGACAAGGCTACCGTCCTGGAAGATGCTATAAAGTACGTGAAACAATTGCAAGAACGGGTAAAGATTCTGGAGGAACAAAGTGTGGATAAAACAGTTGAATCTGCAATCTTTGTGAAGAGATCTGTTGTCTTCTCCGGAGATGACAGCACCTACTCTGGTGAAAACTCTGACCAATCACTCCCCGAAATCGAAGCAAGAATTTCTGGCAAAGAGGTACTCGTCAGGCTCCACTGCGACAAACACAGTGGACGAACAGCTGCTATACTAAGGGAATTAGAGAACCATAATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTCGGAAATAACACTCTTGACGTAACTATTGTTGCTAAGATGGGGAAGGACTACTGCTTGACTGCAAAAGATCTCATCAGAAGCTTAAGTCAGTGTTTGAGGCAGCTTTCGTAG 1074 0.4469 MTQISSTVYLPDFGMEDPTLFHQYPMDSFPFQLDDFDFESFSASPKGSSSHKRLSSESTQNSSLTQSPETSVAPPRPTKQPKTTMSTWSAYGTDMIAPKAASSSSSKIISFDKSSASSVSSQQLYKLDNAKLLKKPKIETGYGENLDFSAVASQRFYDNNSFLDYDKQEKKAAVTMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKTDKATVLEDAIKYVKQLQERVKILEEQSVDKTVESAIFVKRSVVFSGDDSTYSGENSDQSLPEIEARISGKEVLVRLHCDKHSGRTAAILRELENHNLTVQSSSFLPFGNNTLDVTIVAKMGKDYCLTAKDLIRSLSQCLRQLS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium503g00008 357 CDD bHLH_AtNAI1_like 183 255 - -
Vium503g00008 357 Gene3D - 172 245 IPR036638 GO:0046983
Vium503g00008 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 241 IPR036638 GO:0046983
Vium503g00008 357 SMART finulus 187 236 IPR011598 GO:0046983
Vium503g00008 357 MobiDBLite consensus disorder prediction 42 85 - -
Vium503g00008 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Vium503g00008 357 Pfam Helix-loop-helix DNA-binding domain 184 231 IPR011598 GO:0046983
Vium503g00008 357 Coils Coil 220 247 - -
Vium503g00008 357 FunFam Basic helix-loop-helix family protein 178 247 - -
Vium503g00008 357 PANTHER BHLH TRANSCRIPTION FACTOR 25 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium503g00008 Vium-Chr503 104371 106466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium503g00008 164 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.179 1.93e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium503g00008 HLH 8.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium503g00008 - - gmx:100798011 514.998