Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium503g00006 ATGCGACTCTTCCTTTGTTCTCTCTTCTTCTTCCTCTTCCATTCTCACACACTCCATGCTGCGCGCATCTCAGAATATCGCGCGCTTATCTCTTTTAAAGCGTCTTCCATAACCGACGACCCTACCAATGCTCTCTCCTCCTGGAACACCACCACTCCCTACTGTTCCTGGTTCGGTGTCACGTGCGACTCCCGCCGCCACGTCACCATCCTTAACCTCACCTCCTTGTCCCTCTCCGGCACACTCTACGATGACCTCTCCCACCTCCCTTTCCTCTCCTACCTCTCCCTCGCCGACAACCAGTTCTCCGGCCCAATCCCCTCCTCCTTCTCCGCACTCTCCGCCCTCCGCCATCTCAACCTCTCCAACAACGCCTTCAACGCCACCTTCCCCTCCAACCTCGCCCGCCTCGCCAATCTCCAAGTCCTTGACCTCTACAACAACAATATGACCGGTCCCCTCCCCCTCGCCGTCGCCGCCATGCCCCTCCTCCGCCACCTCCACCTCGGCGGCAACTTTTTCGCCGGCCAGATCCCTCCCGAGTATGGCACCTGGCAGCACCTCCAGTACCTCGCCGTCTCCGGCAACGAGCTCACGGGAAACATCCCTCCGGAGCTTGGAAACCTCACCGCGCTTCGCGAGCTCTACATTGGCTACTACAACGCTTACTCCGGCGGCATCCCGCCGGAAATTGGAAACCTGTCCCAGCTTGTCCGTTTCGATGCCGCGTATTGCGGACTCTCCGGCGATATTCCGGCTGACCTCGGAAGGCTTCAGAATATGGACACGCTCTTTCTTCAGGTGAATGCGCTCTCCGGCTCGCTCACTCCTGAGCTGGGGAACCTGAAGAGTCTCAAGTCGATGGATCTGTCCAACAACGTTCTCTCCGGCGAGGTTCCGGCCAGCTTTGCGGAGCTCAAGAATCTCACTTTGCTGAACCTCTTCCGGAACAAGCTCCACGGTGCGATTCCAGAATTTGTCGGAGAGCTACCGGCGCTGGAGGTTTTGCAGCTATGGGAAAACAACTTCACGGGAAGCATTCCTCAGAGTCTGGGAAGAAATGGAAAACTCACTCTCGTTGATCTTTCTTCGAACAAGTTGACGGGAATGCTTCCTCCTGATATGTGCTACGGGAATCGTCTTCAGACTCTGATAACTCTCGGGAATTATCTGCTCGGTCCCATTCCGGATTCGCTTGGGAAGTGCGAGTCTCTGAATAGGATTCGAATGGGTGAGAACTTTCTTAATGGTTCTATTCCTGTTGGTCTATTTGGGCTTCCCAAACTCACCCAAGTAGAGCTTCAGAACAATCTTCTCACTGGACAGTTTCCTGAGGGTGGTTCCGTTGCTGTTAATCTCGGTCAGATCAGTCTCTCTAATAACAAGCTCTCTGGGCCGTTGCCACCCACCATCGGAAACTTCACCAGCATGCAGAAGCTTCTTCTCGACGGTAACAAGTTTTCGGGTCAAATCCCTTCGCAGATAGGCAGGCTGCAGCAGCTCTCCAAGATTGATTTTAGCCATAATCAGTTTTCGGGCCCCATTGCTCCCGAGTTAAGCAGGTGCAAGCTTTTGACTTTCATTGACCTCAGCCGCAATGAGCTCTCTGGTGAGATTCCAAATCAGATAACTGCAATGCGGATATTGAATTATCTGAACCTTTCAAGAAACCATTTAGTTGGCTCAATTCCAGGCTCCATAGCTTCTATGCAAAGTTTAACATCTGTTGATTTTTCCTACAACAATCTCTCTGGTTTGGTTCCTGGAACCGGGCAGTTCGGCTACTTTAACTACACCTCTTTCCTAGGGAACACTGAACTCTGTGGTCCTTATTTGGGTCCTTGTAAAGACGGGGTTGCCAATGGCCCTCGTCAACCTCATGTTAAAGGTCCTCTCTCTTCTTCGTTGAAGCTTCTGTTAGTTATAGGGTTGCTTGTGTGCTCCATCGCATTTGCTGTTGCGGCAATAATCAAAGCTCGGGCTTTGAAAAAGGCTAGTGAAGCTCGTGCGTGGAAATTAACTGCGTTCCAGCGTTTGGACTTCACTGCTGATGATGTTCTGGACTGCTTGAAGGAGGACAACATAATAGGAAAAGGAGGTGCAGGCATTGTGTACAAAGGTGCAATGCCGAATGGGGATCAGGTTGCTGTGAAAAGGTTACCTGCCATGAGCAGGGGATCTTCGCATGATCATGGTTTCAATGCTGAGATTCAGACATTGGGGAGGATTCGACACAGACACATTGTTAGACTGTTGGGTTTCTGTTCAAACCACGAGACAAATCTCTTGGTGTATGAGTATATGCCTAATGGAAGTTTGGGTGAGGTTCTTCATGGCAAGAAAGGTGGTCATTTGCATTGGGACACAAGGTATAAGATTGCTGTGGAGGCCGCGAAGGGCCTGTGCTATCTACATCATGACTGTTCGCCACTCATTGTCCATCGAGATGTTAAATCCAACAACATCCTTCTTGATTCTAACTTTGAAGCTCATGTTGCGGACTTTGGGCTCGCTAAGTTCCTGCAAGATTCTGGAACATCTGAATGCATGTCTGCAATTGCCGGTTCGTATGGATACATAGCTCCAGCCTTTNAGTCGATGGATCTGTCCAACAACGTTCTCTCCGGCGAGGTTCCGGCCAGCTTTGCGGAGCTCAAGAATCTCACTTTGCTGAACCTCTTCCGGAACAAGCTCCACGGTGCGATTCCAGAATTTGTCGGAGAGCTACCGGCGCTGGAGGTTTTGCAGCTATGGGAAAACAACTTCACGGGAAGCATTCCTCAGAGTCTGGGAAGAAATGGAAAACTCACTCTCGTTGATCTTTCTTCGAACAAGTTGACGGGAATGCTTCCTCCTGATATGTGCTACGGGAATCGTCTTCAGACTCTGATAACTCTCGGGAATTATCTGCTCGGTCCCATTCCGGATTCGCTTGGGAAGTGCGAGTCTCTGAATAGGATTCGAATGGGTGAGAACTTTCTTAATGGTTCTATTCCTGTTGGTCTATTTGGGCTTCCCAAACTCACCCAAGTAGAGCTTCAGAACAATCTTCTCACTGGACAGTTTCCTGAGGGTGGTTCCGTTGCTGTTAATCTCGGTCAGATCAGTCTCTCTAATAACAAGCTCTCTGGGCCGTTGCCACCCACCATCGGAAACTTCACCAGCATGCAGAAGCTTCTTCTCGACGGTAACAAGTTTTCGGGTCAAATCCCTTCGCAGATAGGCAGGCTGCAGCAGCTCTCCAAGATTGATTTTAGCCATAATCAGTTTTCGGGCCCCATTGCTCCCGAGTTAAGCAGGTGCAAGCTTTTGACTTTCATTGACCTCAGCCGCAATGAGCTCTCTGGTGAGATTCCAAATCAGATAACTGCAATGCGGATATTGAATTATCTGAACCTTTCAAGAAACCATTTAGTTGGCTCAATTCCAGGCTCCATAGCTTCTATGCAAAGTTTAACATCTGTTGATTTTTCCTACAACAATCTCTCTGGTTTGGTTCCTGGAACCGGGCAGTTCGGCTACTTTAACTACACCTCTTTCCTAGGGAACACTGAACTCTGTGGTCCTTATTTGGGTCCTTGTAAAGACGGGGTTGCCAATGGCCCTCGTCAACCTCATGTTAAAGGTCCTCTCTCTTCTTCGTTGAAGCTTCTGTTAGTTATAGGGTTGCTTGTGTGCTCCATCGCATTTGCTGTTGCGGCAATAATCAAAGCTCGGGCTTTGAAAAAGGCTAGTGAAGCTCGTGCGTGGAAATTAACTGCGTTCCAGCGTTTGGACTTCACTGCTGATGATGTTCTGGACTGCTTGAAGGAGGACAACATAATAGGAAAAGGAGGTGCAGGCATTGTGTACAAAGGTGCAATGCCGAATGGGGATCAGGTTGCTGTGAAAAGGTTACCTGCCATGAGCAGGGGATCTTCGCATGATCATGGTTTCAATGCTGAGATTCAGACATTGGGGAGGATTCGACACAGACACATTGTTAGACTGTTGGGTTTCTGTTCAAACCACGAGACAAATCTCTTGGTGTATGAGTATATGCCTAATGGAAGTTTGGGTGAGGTTCTTCATGGCAAGAAAGGTGGTCATTTGCATTGGGACACAAGGTATAAGATTGCTGTGGAGGCCGCGAAGGGCCTGTGCTATCTACATCATGACTGTTCGCCACTCATTGTCCATCGAGATGTTAAATCCAACAACATCCTTCTTGATTCTAACTTTGAAGCTCATGTTGCGGACTTTGGGCTCGCTAAGTTCCTGCAAGATTCTGGAACATCTGAATGCATGTCTGCAATTGCCGGTTCGTATGGATACATAGCTCCAGAGTATGCCTACACGTTAAAAGTTGATGAGAAAAGCGATGTGTACAGCTTTGGAGTTGTTCTTTTGGAGCTTGTAACAGGCAGGAAACCAGTTGGGGAGTTTGGTGATGGTGTGGACATTGTGCAATGGGTGAGGAAAATGACGGATTCAAACAAGGAAGGAGTTCTAAAGGTTCTTGATCCTAGACTTCCATCAGTTCCTCTCCATGAGGTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAAGAACAGGCAGTGGAGCGACCTACTATGCGAGAAGTTGTTCAAATTCTCACCGAGCTTCCAAAGCCACCGAGCTCTAAACAGGGGGACTTGACGGAGTCCTCTCTGTCTTCATCAAACAGTTTAGAGTCTCCAACCACGGCATCTAAGGAATCTAAAGATAATCAACGCCCTCCTCAGTCTCCACCACCCGATCTTCTTAGCATTTGA 4779 0.4913 MRLFLCSLFFFLFHSHTLHAARISEYRALISFKASSITDDPTNALSSWNTTTPYCSWFGVTCDSRRHVTILNLTSLSLSGTLYDDLSHLPFLSYLSLADNQFSGPIPSSFSALSALRHLNLSNNAFNATFPSNLARLANLQVLDLYNNNMTGPLPLAVAAMPLLRHLHLGGNFFAGQIPPEYGTWQHLQYLAVSGNELTGNIPPELGNLTALRELYIGYYNAYSGGIPPEIGNLSQLVRFDAAYCGLSGDIPADLGRLQNMDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNVLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGELPALEVLQLWENNFTGSIPQSLGRNGKLTLVDLSSNKLTGMLPPDMCYGNRLQTLITLGNYLLGPIPDSLGKCESLNRIRMGENFLNGSIPVGLFGLPKLTQVELQNNLLTGQFPEGGSVAVNLGQISLSNNKLSGPLPPTIGNFTSMQKLLLDGNKFSGQIPSQIGRLQQLSKIDFSHNQFSGPIAPELSRCKLLTFIDLSRNELSGEIPNQITAMRILNYLNLSRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNTELCGPYLGPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSIAFAVAAIIKARALKKASEARAWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPAFXSMDLSNNVLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGELPALEVLQLWENNFTGSIPQSLGRNGKLTLVDLSSNKLTGMLPPDMCYGNRLQTLITLGNYLLGPIPDSLGKCESLNRIRMGENFLNGSIPVGLFGLPKLTQVELQNNLLTGQFPEGGSVAVNLGQISLSNNKLSGPLPPTIGNFTSMQKLLLDGNKFSGQIPSQIGRLQQLSKIDFSHNQFSGPIAPELSRCKLLTFIDLSRNELSGEIPNQITAMRILNYLNLSRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNTELCGPYLGPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSIAFAVAAIIKARALKKASEARAWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKQGDLTESSLSSSNSLESPTTASKESKDNQRPPQSPPPDLLSI 1592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium503g00006 1592 Pfam Protein kinase domain 692 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium503g00006 1592 Pfam Protein tyrosine and serine/threonine kinase 1271 1540 IPR001245 GO:0004672|GO:0006468
Vium503g00006 1592 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 1238 1346 - -
Vium503g00006 1592 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Vium503g00006 1592 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 83 326 - -
Vium503g00006 1592 ProSiteProfiles Protein kinase domain profile. 1269 1543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium503g00006 1592 MobiDBLite consensus disorder prediction 1544 1579 - -
Vium503g00006 1592 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 867 1541 - -
Vium503g00006 1592 FunFam Protein kinase superfamily protein 768 840 - -
Vium503g00006 1592 Gene3D Ribonuclease Inhibitor 356 619 IPR032675 -
Vium503g00006 1592 MobiDBLite consensus disorder prediction 1544 1592 - -
Vium503g00006 1592 Gene3D Ribonuclease Inhibitor 85 351 IPR032675 -
Vium503g00006 1592 Gene3D Ribonuclease Inhibitor 864 1199 IPR032675 -
Vium503g00006 1592 Gene3D Ribonuclease Inhibitor 19 84 IPR032675 -
Vium503g00006 1592 SMART LRR_typ_2 909 933 IPR003591 -
Vium503g00006 1592 SMART LRR_typ_2 474 498 IPR003591 -
Vium503g00006 1592 SMART LRR_typ_2 113 137 IPR003591 -
Vium503g00006 1592 SMART LRR_typ_2 570 593 IPR003591 -
Vium503g00006 1592 SMART LRR_typ_2 330 354 IPR003591 -
Vium503g00006 1592 SMART LRR_typ_2 161 187 IPR003591 -
Vium503g00006 1592 SMART LRR_typ_2 282 305 IPR003591 -
Vium503g00006 1592 SMART LRR_typ_2 1053 1077 IPR003591 -
Vium503g00006 1592 SMART LRR_typ_2 1149 1172 IPR003591 -
Vium503g00006 1592 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 659 767 - -
Vium503g00006 1592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1391 1403 IPR008271 GO:0004672|GO:0006468
Vium503g00006 1592 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 334 619 - -
Vium503g00006 1592 Gene3D Transferase(Phosphotransferase) domain 1 1347 1561 - -
Vium503g00006 1592 ProSiteProfiles Protein kinase domain profile. 690 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium503g00006 1592 SUPERFAMILY Protein kinase-like (PK-like) 686 865 IPR011009 -
Vium503g00006 1592 SUPERFAMILY L domain-like 299 613 - -
Vium503g00006 1592 SUPERFAMILY Protein kinase-like (PK-like) 1265 1540 IPR011009 -
Vium503g00006 1592 SMART serkin_6 690 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium503g00006 1592 SMART serkin_6 1269 1539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium503g00006 1592 Gene3D Transferase(Phosphotransferase) domain 1 765 863 - -
Vium503g00006 1592 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 19 82 - -
Vium503g00006 1592 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 913 1198 - -
Vium503g00006 1592 Gene3D Phosphorylase Kinase; domain 1 1236 1346 - -
Vium503g00006 1592 Gene3D Phosphorylase Kinase; domain 1 657 764 - -
Vium503g00006 1592 SUPERFAMILY RNI-like 71 392 - -
Vium503g00006 1592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Vium503g00006 1592 SUPERFAMILY L domain-like 862 1193 - -
Vium503g00006 1592 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 1347 1557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium503g00006 Vium-Chr503 42784 48843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium503g00006 835 999 Receptor kinase-like Gene Family AT5G65700 33.333 1.05e-14 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium503g00006 PK_Tyr_Ser-Thr 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium503g00006 - - vum:124844178 3093.52