Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5036g00003 ATGTCTGTGCACTATAAGCAGCTGCTGTTGCAGCTGCTTCTTGTTGCCCTCCTTATTGCAAAATCTAAAACTCAAGCCATATCAAAGCCAAACTGTTCTTCAAACTGTGGCGATGTTACCATTCCCTTCCCCTTCGGCATCTCTGACACTTGTTCCTTAGACCCCTCATTTGTTCTTACTTGCAACCAAACCTCTCCCTCATCACACACCCTCTTCCTGCCACAAACCAATATAACCGTGCTTAACATCTCACTCAACGGCCAAATGCAAATTTCATGGCCTGTAGCCAGCGACTGCTACGCCGACGGAGGAAAACTCGTGAGACAATCATTTCAAGACCTAAACCTCACAACTTTTCAAGTCTCTTCCAACAGAAACAGGTTGACTGTAGTTGGGTGTGACACGCTTGGATTAATGGTGGGAAGCGATTTGGAGGGAAAGAACTACACCACGGGATGCATTTCCTTGTGCAACAGGCTCCAAGACATCGAAACAAACGGCACTTGTTCCGGCACCGGTTGTTGCGAGACTTCGATTCCACGCGGGTTGTCGAGTTTCTCCTACGGTTCAGGGAGTTTGTTCAAGCACACGCATGTAATAGACTTCAACCCGTGCGGGTATGTGTTTCTTGTGGAAGATGGGGCCTACAATTTCTCCTCCACGGACCTCGTCAAGTTCGACAAAACCACGTTTCCCGTTGCGGTGGATTGGGTGGTTAAGAACCAAACGTGCGAAGATGGTAAGAAAGAGGCTTTCAGTTACGCGTGTAAGGCAGAGAACAGTGAATGTTTTCATTCAGTAGAGGCATCTGGTTACCTTTGCAGCTGCTCAAACGGTTTCGTGGGAAATCCCTATCTTCTTCATGGTTGCGAAGATGTTAACGAATGCATGGGATCCAACGATTGCGTTGATGGGGCCAAATGCAGTAACTCTCCTGGTGGTTATAACTGTTTATGCCCAAAAGGATTTGAAGGAGATGGAAAAAATTATGGAACAAGATGCACTTACAAATCTACCATCAATTCAAGGAAAGAAATCATACTCATAATTGCTCTGAGTGTGAGTGTAGGCCTAGTAGCACTGCTTGTGGGAAGCTTTTATGTGTATTGGGCATCAAAGAAAAGAAAGATAATCAAACTTAAAGAACAATTTTTTCACCAAAATGGTGGTCTTTTCTTACAACAACACATAATCAAGCATAAAGGGTCTATTGAAACGGCTAAAGTCTTCACTATAGAGGAGCTAGAAGAGGCCACCGACAACTTTGATGAAGGCAAGATTCTTGGCCAAGGTGGCCAAGGAACAGTTTACAAAGGAGTATTGCTAGACAATAGAACAGTGGCAATTAAGAAGTCTAAAATTAGTGATCCGAATCAGATTGAACAATTCATTAACGAGGTAATTGTGCTTTCTCAAATCAATCATAAAAATGTGGTAAAACTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCCATGCTGGTTTATGAATTCATTCCCAATGGTACTATTTATGAGCACCTTCATGATCATAATTGTTTTCTAAAACTTTTATGGAAAACAAGGTTGAGAATAGCAACAGAAACAGCTGGGGCCTTGGCTTATTTGCACTCAGCTACTTGTACACCTATCATACACAGAGATGTGAAAACTACAAATATTCTTCTTGATCATAATCTCTTTGCAAAGGTTTCTGATTTTGGAGCATCAAGGATTTTTCCCCTTGATCAGTCTCAACTAACCACTCTGGTGCAGGGAACATTAGGGTATCTTGATCCAGAATACTTTCACACAAGCCAATTGACAGAGAAGAGTGATGTGTATAGTTTTGGGGTTGTCCTGGCAGAGCTAGTAACAGGAATGAAGGCACTTTCATTTGATAGGCCAGAGGCTAGTAGAAACCTTGCACTGTACTTTGTTTCTTCAATGAAAACAGGTCAATTACTTAACATTGTGGACAACCAAATATTGCATGAGGCAGATGTTGAGCAACTGAAAGAAGTTGCCAATATTGCAAATCGATGTTTAAAGGTGAAAGGAGAGGAAAGACCCACCATGAAAGAAGTGGCAATAGAACTTGAGGGACTTCAAATTGTGGGAAAACACGGATGGGAAAGTGTTAGTTCGTCTTCAGAAGAGACTGAAAACTTCATAAACTCAGCACCATCCGTTCTTTGTGTTGAAAGTGGCATCAATTTAGCTTTTGATTGCTTAAACCAGATTTCCACGTCTTTGGGGAGTGGAAGATGA 2247 0.4228 MSVHYKQLLLQLLLVALLIAKSKTQAISKPNCSSNCGDVTIPFPFGISDTCSLDPSFVLTCNQTSPSSHTLFLPQTNITVLNISLNGQMQISWPVASDCYADGGKLVRQSFQDLNLTTFQVSSNRNRLTVVGCDTLGLMVGSDLEGKNYTTGCISLCNRLQDIETNGTCSGTGCCETSIPRGLSSFSYGSGSLFKHTHVIDFNPCGYVFLVEDGAYNFSSTDLVKFDKTTFPVAVDWVVKNQTCEDGKKEAFSYACKAENSECFHSVEASGYLCSCSNGFVGNPYLLHGCEDVNECMGSNDCVDGAKCSNSPGGYNCLCPKGFEGDGKNYGTRCTYKSTINSRKEIILIIALSVSVGLVALLVGSFYVYWASKKRKIIKLKEQFFHQNGGLFLQQHIIKHKGSIETAKVFTIEELEEATDNFDEGKILGQGGQGTVYKGVLLDNRTVAIKKSKISDPNQIEQFINEVIVLSQINHKNVVKLLGCCLETEVPMLVYEFIPNGTIYEHLHDHNCFLKLLWKTRLRIATETAGALAYLHSATCTPIIHRDVKTTNILLDHNLFAKVSDFGASRIFPLDQSQLTTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELVTGMKALSFDRPEASRNLALYFVSSMKTGQLLNIVDNQILHEADVEQLKEVANIANRCLKVKGEERPTMKEVAIELEGLQIVGKHGWESVSSSSEETENFINSAPSVLCVESGINLAFDCLNQISTSLGSGR 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5036g00003 748 Pfam Wall-associated receptor kinase galacturonan-binding 32 88 IPR025287 GO:0030247
Vium5036g00003 748 Gene3D Phosphorylase Kinase; domain 1 394 497 - -
Vium5036g00003 748 Pfam Calcium-binding EGF domain 292 334 IPR001881 GO:0005509
Vium5036g00003 748 FunFam Wall-associated receptor kinase 2 392 497 - -
Vium5036g00003 748 FunFam Wall-associated receptor kinase 2 498 715 - -
Vium5036g00003 748 FunFam Fibrillin 2 287 330 - -
Vium5036g00003 748 ProSitePatterns Calcium-binding EGF-like domain signature. 292 317 IPR018097 GO:0005509
Vium5036g00003 748 CDD STKc_IRAK 428 695 - -
Vium5036g00003 748 SUPERFAMILY EGF/Laminin 292 329 - -
Vium5036g00003 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Vium5036g00003 748 SUPERFAMILY Protein kinase-like (PK-like) 406 690 IPR011009 -
Vium5036g00003 748 Gene3D Transferase(Phosphotransferase) domain 1 498 713 - -
Vium5036g00003 748 SMART egfca_6 292 335 IPR001881 GO:0005509
Vium5036g00003 748 SMART serkin_6 422 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5036g00003 748 Gene3D Plasmodium vivax P25 domain 200 340 - -
Vium5036g00003 748 SMART egf_5 295 335 IPR000742 -
Vium5036g00003 748 SMART egf_5 243 291 IPR000742 -
Vium5036g00003 748 ProSiteProfiles Protein kinase domain profile. 422 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5036g00003 748 ProSiteProfiles EGF-like domain profile. 292 335 IPR000742 -
Vium5036g00003 748 Pfam Protein tyrosine and serine/threonine kinase 425 690 IPR001245 GO:0004672|GO:0006468
Vium5036g00003 748 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 704 IPR045274 GO:0007166
Vium5036g00003 748 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 308 319 IPR000152 -
Vium5036g00003 748 CDD EGF_CA 292 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5036g00003 Vium-Chr5036 28405 31215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5036g00003 1 703 Receptor kinase-like Gene Family AT1G21230 46.473 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium5036g00003 PK_Tyr_Ser-Thr 7.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5036g00003 - - var:108330433 1453.34