Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5034g00001 ATGTTGCTCGAAATTACAATTGGTTTGCTGGTGCTGGCTTTGTTTTTGCACTTGCGTCCCACACCCACTGCTAAATCAAAGGCCCTTCGCCACCTTCCCAACCCTCCCAGTCCAAAGCCTCGTCTTCCATTCATTGGTCACCTTCACCTTCTAAAGGACAAACTTCTCCACTATGCTCTCATAGATTTATCCAAAAAGTATGGCCCTCTGTATTCTCTCTACTTTGGGTCTATGCCAACCATTGTTGCCTCCTCCCCTGAGTTATTCAAACTCTTCCTTCAAACCCACGAGGCTGCTTCCTTCAACACAAGGTTCCAAACCTCTGCCATAAGGCGCCTCACTTATGACAACTCAGTGGCCATGGTTCCCTTTGGACCTTACTGGAAGTTCATCAGGAAGCTCATCATGAACGACCTTCTCAACGCCACCACCGTCAACAAGTTGAGGCCCCTGAGGACCCAACAGATCCGTAAGTTCCTCAAGGTGATGGCCCAAAGCGCACAGGCTCAACAGCCCCTTAACGTCACCGAGGAGCTTCTTAAGTGGACCAACAGCACTATCTCCATGATGATGTTGGGTGAGGCTGAAGAGATTAGAGATATTGCTCGTGAGGTGCTTAAGATTTTCGGGGAGTACAGTCTCACTGACTTCATCTGGCCATTGAAGAAGCTCAAGTTTGGACAGTACGAGAAGAGGATCGATGAAATATTCAACAAGTTCGACCCTGTCATTGAGAGGGTTATTAAGAAGCGCCGAGAGATCATGAGAAGGAGAAAGAACGGAGAAGTCATTGAGGAAGAGCAGAGCGGAGTTTTCCTCGACACTTTGCTTGAATTCGCTGAGGACGAGACCATGGAGATCAAAATTACCAAGGAGCAGATCAAGGGTCTTGTTGTTGACTTCTTCTCAGCAGGGACAGATTCCACAGCTGTGGCAACTGAGTGGGCTTTGGCAGAGCTGATCAACAACCCTAGGGTGTTGCAGAAGGCTCGGGAGGAGGTATACAGTGTTGTGGGAAAAGATAGACTGGTTGATGAAGTTGATACTCAAAACCTTCCTTACATCAGGGCGATTGTGAAGGAGACATTCCGCATGCACCCACCACTCCCTGTGGTGAAAAGAAAGTGTGTGGAAGAGTGTGAGATTGACGGGTATGTGATCCCAGAGGGAGCATTGATACTTTTCAATGTGTGGGCTGTAGGAAGAGACCCTAAATACTGGGACAGACCATTGGAGTTTCGTCCTGAGAGATTCTTGGAAACTGGAGCTGAAGGAGAAGCTGGGCCTCTTGATCTTAGGGGCCAACATTTCACACTTCTCCCATTTGGGTCAGGTAGAAGAATGTGCCCTGGAGTGAATTTGGCTACTTCAGGTATGGCAACACTTCTTGCATCTGTTATCCAGTGCTTTGACCTGCAAGTGGTGGGCCCACAAGGACAAATATTGAAAGGCAACGACGCCAAAGTGAGCATGGAAGAGAGAGGTGGACTCACGGTTCCAAGGGCACATAATCTGGAGTGTGTTCCAGTTGCAAGGACAAGCGTTGCAGCTAAACTCCTTTCCTAG 1566 0.4847 MLLEITIGLLVLALFLHLRPTPTAKSKALRHLPNPPSPKPRLPFIGHLHLLKDKLLHYALIDLSKKYGPLYSLYFGSMPTIVASSPELFKLFLQTHEAASFNTRFQTSAIRRLTYDNSVAMVPFGPYWKFIRKLIMNDLLNATTVNKLRPLRTQQIRKFLKVMAQSAQAQQPLNVTEELLKWTNSTISMMMLGEAEEIRDIAREVLKIFGEYSLTDFIWPLKKLKFGQYEKRIDEIFNKFDPVIERVIKKRREIMRRRKNGEVIEEEQSGVFLDTLLEFAEDETMEIKITKEQIKGLVVDFFSAGTDSTAVATEWALAELINNPRVLQKAREEVYSVVGKDRLVDEVDTQNLPYIRAIVKETFRMHPPLPVVKRKCVEECEIDGYVIPEGALILFNVWAVGRDPKYWDRPLEFRPERFLETGAEGEAGPLDLRGQHFTLLPFGSGRRMCPGVNLATSGMATLLASVIQCFDLQVVGPQGQILKGNDAKVSMEERGGLTVPRAHNLECVPVARTSVAAKLLS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5034g00001 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Vium5034g00001 521 Pfam Cytochrome P450 36 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 Gene3D Cytochrome P450 24 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 CDD CYP93 68 509 - -
Vium5034g00001 521 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 SUPERFAMILY Cytochrome P450 30 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium5034g00001 521 FunFam Cytochrome P450 family protein 26 507 - -
Vium5034g00001 521 PANTHER STEROID 21-HYDROXYLASE-RELATED 14 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5034g00001 Vium-Chr5034 13902 16112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5034g00001 32 517 Cytochrome P450 AT5G06900 36.217 1.71e-107 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5034g00001 - - gmx:100037450 928.317