Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5032g00001 ATGGATATGGAAGCCAAGACAGTTCATAAACGCTGGCGGTCCACCCCGGAACAAGTTAGAATCTTGCTGAACATCTACAACCATGGGATCATCAATCCTACTCGAGATCAAGTTTGCGAGATTACAGAACGAATCCGGGAGTACGGGGAAGTCGGAGAATACAGCGTCTACTGCTGGTTTCAGAATCATGGAAATCGGGTGAAGAATAAAGGCTGGCAACAAAGCATCCCTGGTAAACCTGGATCTTCATTTACTCTTATTCCGCCATTTTTGTATGATCCTTCATGGGTACTTCCACGGACTCCGAAGCTCTTAGATCTCTTTCCCATTCCCGCTATACGTAAAGAGGAAGGGAAAGTTACTCCACCTATGTTGTTTCGTACCCAAGCTCCTTCCACAGAGCTTTCTCTGAGATTGTCGCTCGCCGATTAG 432 0.4653 MDMEAKTVHKRWRSTPEQVRILLNIYNHGIINPTRDQVCEITERIREYGEVGEYSVYCWFQNHGNRVKNKGWQQSIPGKPGSSFTLIPPFLYDPSWVLPRTPKLLDLFPIPAIRKEEGKVTPPMLFRTQAPSTELSLRLSLAD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5032g00001 143 Gene3D - 9 75 - -
Vium5032g00001 143 ProSiteProfiles 'Homeobox' domain profile. 5 70 IPR001356 GO:0003677
Vium5032g00001 143 CDD homeodomain 10 70 IPR001356 GO:0003677
Vium5032g00001 143 Pfam Homeodomain 10 68 IPR001356 GO:0003677
Vium5032g00001 143 PANTHER WUSCHEL-RELATED HOMEOBOX 9 9 71 IPR044557 GO:0003700|GO:0050793
Vium5032g00001 143 SUPERFAMILY Homeodomain-like 5 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5032g00001 Vium-Chr5032 1009 1547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5032g00001 11 70 Wox Gene Family AT5G45980 48.333 3.62e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium5032g00001 Homeodomain 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5032g00001 - - vum:124839824 302.753