Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium501g00003 ATGGTTCAGAAGTACTTGTTGCACGAGCTACTTCAGGAGGATCAAGAGCCCTTTCTTCTAAACAAGTACATTTCCGATAGGCGAAGCCAGATGAAACGGCCTTCCTCCAATACCTCTTTGCAAGTCAAGAAACACAAATCAACCAATCCAACCCCAAGCTTCCCGGGGAATTTCTGCAAAAGTGCTTGTCTTTTTTCCCTCACAGACACCCCAGATTTCAGAAAATCTCCACTCTTCGAATTCGCTTCCGCAGCAAAAAGCCCTTGCAAATCCCCCAACGCTATCTTCCTTCACATCCCTTCCCGAACCGCGTCTCTGCTTCTGGAAGCCGCTGTCAGGATCCAGAAACACTCCTCACCCGCTTCACGGCCCAAAATTAAAGCCCAATCCTTCGGTCTCTTCGGTTCCCTCTACAAGAGACTCACGCAACGGGGCCAGAAGAAGCGCGAGATAGAGGGTGCTGGAAGCGTCAAGGTTTCGGTTAAGGACATTCTGAAGTGGGATTCCTCTGTTGGGCGAAAAAAAGGTTCCAACAAGAAAGAGGATGAAGAAACTGTGAATGTGAATGCGAATGCGTGTGAAGTGGGGTTTGTGTGTTCTTACAATGGTAGAACTAGTAGTGCTGTTTGGTCAGAGACCAACGCGGATAAATCCCTCAACATGGAAACGTCTAGTAGCGGCTACTCCGACGAGATTCACTTCATAACCAATTACACAAACTCCACCTGCTTCTGCGAAAGTCCGTTCCGTTTTGTTCTTCAAACTAGTTCTCCCTCCGACGGCCGCCACACGCCGGAGCTTACCTCGCCAAGTCGCCACGCGACTGAGGAGAAAGAAAGTAACGAAGGCGAGAGTGTGAAGAAGTTCGAATCAGGGGAAGAAGAGGAGGAAGACAAAGAACAGTGCAGTCCAGTGTGTGTGTTAGACCCACCGTTCGAGGACGATGACGAAGGGCATGGGAACGGTGATGAAGGAGAGGAGGGTGGTTTTGATTCGGAGTGCAGCTATGCGATTGTACAGAGAGCCAAGCAGCAGTTATTGTACAAGCTTCGTAGATTTGAGAAACTGGCAGAGTTGGATCCGGTAGAACTTGAGAGAAGAATGCACGATGAAGAAGACGAGGAGGAGGATGAATCATTTATGAAGGAAACATTACGTAAAGAAAATGCCAGTAGAGAGGTGATTTTGAAAGGTCTGTGGCAGTCAAGGGTGTATGACAGACAGCAAATCCCAGATGAGTTTAAGAAGCTGGTATCTGATCTGATAATGGAAGAAGAGAGAGCACTCGATGAGTTGGAAGACAGGGATATGGTGATAACAAGGATATGCAAGAGGTTGGAGTTGTGGAAAGAAGTGGAGTCGAATACAATTGATATGATGATAGAAGATGACTTCTCTAGGGAGGATGGTGGGTGGAAGAAAAATGTGGAGCAGATAAGAAATATGGCTGGGGAGCTTGAGTGTGCTATCTTCGGCTTTCTGCTGGAGGAATTTTCAGAGGAACTAGTATGCTAA 1515 0.4746 MVQKYLLHELLQEDQEPFLLNKYISDRRSQMKRPSSNTSLQVKKHKSTNPTPSFPGNFCKSACLFSLTDTPDFRKSPLFEFASAAKSPCKSPNAIFLHIPSRTASLLLEAAVRIQKHSSPASRPKIKAQSFGLFGSLYKRLTQRGQKKREIEGAGSVKVSVKDILKWDSSVGRKKGSNKKEDEETVNVNANACEVGFVCSYNGRTSSAVWSETNADKSLNMETSSSGYSDEIHFITNYTNSTCFCESPFRFVLQTSSPSDGRHTPELTSPSRHATEEKESNEGESVKKFESGEEEEEDKEQCSPVCVLDPPFEDDDEGHGNGDEGEEGGFDSECSYAIVQRAKQQLLYKLRRFEKLAELDPVELERRMHDEEDEEEDESFMKETLRKENASREVILKGLWQSRVYDRQQIPDEFKKLVSDLIMEEERALDELEDRDMVITRICKRLELWKEVESNTIDMMIEDDFSREDGGWKKNVEQIRNMAGELECAIFGFLLEEFSEELVC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium501g00003 504 MobiDBLite consensus disorder prediction 256 330 - -
Vium501g00003 504 Coils Coil 415 435 - -
Vium501g00003 504 MobiDBLite consensus disorder prediction 316 330 - -
Vium501g00003 504 MobiDBLite consensus disorder prediction 30 51 - -
Vium501g00003 504 PANTHER OS04G0572500 PROTEIN 1 502 - -
Vium501g00003 504 MobiDBLite consensus disorder prediction 266 294 - -
Vium501g00003 504 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium501g00003 Vium-Chr501 61285 64856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium501g00003 1 313 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 44.345 1.84e-61 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium501g00003 - - gmx:100790018 668.307