Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium501g00001 ATGGACTTGCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAGCCACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTACCAGCTACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATCTTCAGGTACATGTTAGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTTTGCTGCAATCTGGGTATTGGGGTAGAGGAGCGATGGATCCAGAGCCAGGGCGGTGCCGGAGAACTGACGGGAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGAAAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAAGTAGTGCTAATTGCGGTGGTAGTGGTGGTGGTGGTGGAACTCTAGGACTAGGTGCTTCATCTTCCATTTCTTCACCTCCGCTAGCTACTGCTTCTCTGAAATCCCCTTTTGATCTTCTTCATCTTAGTGAACGCTCTTCTGGGACCAAGAATGAAGACAAGAGCTTGTTTGAAAATGAAGATAATGTGGGTGGGGATGGCAGAGCAGGTGGGCATATGCTGAGGCATTTTTTCGATGATTGGCCAAGATCAATGCAACACTCTGACAACGTTGAAAACAATGCTGCCCCTGCCCGGATAAACTCTTCCACATGTCTTTCTATTTCTATGCCCGGAAATGCTTCCTCAGATGTCTCTTTGAAATTGTCCACTGGCCCAACAAATGAGAATGTCAATCTCCAGTCGGACCAACTGCAGTTGAATTGGGCCGGAGGATGGGCCGGAGGTAGTCAAGTGGCTTCAATGGGTGGGCCACTTGCTGAGGCACTCAGATCATCTACTTCAACTTCATCTCCTACTAGCGTTTTGCATCACTTGCCTCCTGCTTCTGGATCTGAGACCAGCTTCGTTACCACCTGA 1143 0.4882 MDLHLKQWRNQHESEEQHSTKMPKLLPESHQQPQTQSSASALPLFVPEPNSKVSTLSDSTLPATNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGKKYCERHMHRGRNRSRKPVELPTPSSANCGGSGGGGGTLGLGASSSISSPPLATASLKSPFDLLHLSERSSGTKNEDKSLFENEDNVGGDGRAGGHMLRHFFDDWPRSMQHSDNVENNAAPARINSSTCLSISMPGNASSDVSLKLSTGPTNENVNLQSDQLQLNWAGGWAGGSQVASMGGPLAEALRSSTSTSSPTSVLHHLPPASGSETSFVTT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium501g00001 380 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Vium501g00001 380 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium501g00001 380 MobiDBLite consensus disorder prediction 1 38 - -
Vium501g00001 380 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium501g00001 380 MobiDBLite consensus disorder prediction 349 380 - -
Vium501g00001 380 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium501g00001 380 MobiDBLite consensus disorder prediction 171 207 - -
Vium501g00001 380 MobiDBLite consensus disorder prediction 1 23 - -
Vium501g00001 380 PANTHER GROWTH-REGULATING FACTOR 5 32 305 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium501g00001 380 MobiDBLite consensus disorder prediction 24 38 - -
Vium501g00001 380 Pfam WRC 142 184 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium501g00001 Vium-Chr501 11536 14685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium501g00001 1 367 GRF Transcription Factor Family AT3G52910 51.813 6.75e-99 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium501g00001 WRC 5.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium501g00001 - - gmx:100814842 572.007