Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5018g00006 ATGAGGAAGAAAAGGAAAGGAAGCGAGGCTGATGCGTCTGCGGATCTGCCTGTTATTTTGTCTCCAAATCTTGGCTCTGCTTCGTCGAATTTGAAGTCCCATTATTCGCTAGAGGATTGTTCTAGGCTGAAGAAGAGGTGTTGTAAGGAGGAGGATGCTGCCACTGAGCCTGCTGCTTCCTTTAAAAGGAGGCTTGCCGGCATTGCCACTGCCCCGCCTTGTGGGACGTCTTCGTTGATCACGCCGGGGCGAGGGCTTAAGAGGAAGATTGGATGCATCGATGTTGCTACCCAGATGGGCAGGAAGAAGAAGATTGAGGATGATTATCTGACTGGTGAGACGATTGGACAAGGCAAGTTTGGGTCTGTTTGGCTGTGTCGGTCCAGGGTTAGCGGAGCAGAATATGCATGTAAGACCTTGAGGAAGGGGGAGGAGACGGTTCACCGAGAGGTTGAGATAATGCAACACTTGTCCGGTCATTCTGGGGTTGTGACACTACAAGCAGTATATGAGGAAGCTGATTGCTTTCATCTTGTAATGGAATTGTGCTCCGGGGGACGACTGATCGATCAGATGGTTAAGGATGGTCCTTATTCAGAACAGAGGGCTGCCAATGTACTCAAGGAAGTGATGTTGGTCATCAACTATTGTCATGACATGGGAGTTGTGCACAGAGATATCAAACCTGAAAATATACTGCTCACCGCATCTGGGAAAATAAAGCTTGCAGATTTTGGTTTGGCCATGAGAATTTCCGAAGGTCAGAACTTGACTGGTTTGGCGGGAAGCCCTGCCTATGTTGCCCCAGAAGTATTGTTAGGCAGATACTCTGAGAAGGTGGATATATGGAGTGCTGGAGTGCTTCTGCATGCTTTGTTGGTTGGCAGTCTTCCATTTCAAGGAGATTCATTGGAAGCAGTTTTTGAGGCTATTAAGACCATCAAAATAGATTTCCAAACTGGGATGTGGGAATCAATATCTAAACCTGCGCGAGATCTTATTGGGAGAATGCTAACAAGGGATATCTCAGCTAGGATATCAGCTGACGAAGTACTTAGACATCCATGGATATTGTTCTACACGGCACAGACATTGACGATGCTACCCATCAAATCAAAATTGAAGAACCAAATTGGCGCAACAACTCAACAGTTTGTTGCCGTTCCTGAACCAGGATTAGGAGGAAATAGAATAGATAATTACTCACTTAGCGAGGGTTCATTCTCCGAAAGTTGCACTTCAGATGATCAGGATGAATCGGTGTTGATTGATGTGCTTGCCTCTGCAATTTCGCATGTGAGGATATCTGAACCAAAGAGGAGCAGGGTGTGTGGTCCCACAGGTCCGATAGTTCAACAAGGTTCATCTAACATGAAGCCTAACAACCTTTGTAAAGCATTTTAA 1404 0.4615 MRKKRKGSEADASADLPVILSPNLGSASSNLKSHYSLEDCSRLKKRCCKEEDAATEPAASFKRRLAGIATAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKKIEDDYLTGETIGQGKFGSVWLCRSRVSGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEADCFHLVMELCSGGRLIDQMVKDGPYSEQRAANVLKEVMLVINYCHDMGVVHRDIKPENILLTASGKIKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGRYSEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTIKIDFQTGMWESISKPARDLIGRMLTRDISARISADEVLRHPWILFYTAQTLTMLPIKSKLKNQIGATTQQFVAVPEPGLGGNRIDNYSLSEGSFSESCTSDDQDESVLIDVLASAISHVRISEPKRSRVCGPTGPIVQQGSSNMKPNNLCKAF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5018g00006 467 Pfam Protein kinase domain 111 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5018g00006 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vium5018g00006 467 Gene3D Transferase(Phosphotransferase) domain 1 100 389 - -
Vium5018g00006 467 PANTHER SERINE/THREONINE-PROTEIN KINASE 96 377 - -
Vium5018g00006 467 SUPERFAMILY Protein kinase-like (PK-like) 100 386 IPR011009 -
Vium5018g00006 467 ProSiteProfiles Protein kinase domain profile. 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5018g00006 467 CDD STKc_CAMK 108 356 - -
Vium5018g00006 467 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Vium5018g00006 467 FunFam Serine/threonine-protein kinase PEPKR2 100 422 - -
Vium5018g00006 467 SMART serkin_6 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5018g00006 Vium-Chr5018 39308 42328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5018g00006 109 357 EF-hand Containing Proteins AT1G50700 45.560 5.60e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium5018g00006 Pkinase 1.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5018g00006 - - gmx:100812729 869.766