Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5014g00003 ATGGTGGTGCTGTCATCGGAGGATGAATTCGACGAGGAGCCCGGCGAGGTTATTGAATCAGCGCCGCCGCAGAAGGTGGGAGAAGAGAGGCAACTCAGAGGTCTCAAGAAGAAGCTTCTCAGACACGGACACGGCTGGGAAACCCCCAACTTCAACGACGTCGTAACGGTTCACCGTGTTGAGACATTGCTCGATGGAGCGGCGTTGGGTTCTTCCACTTGGGACACGGATCAACCCTTGACGTTTACTCTTGGCAATGGTGATGTTCCTGGGTTGGACCGTGGGATTACGAGTATGAAGAAAGGGGAGGTGGCATGTTCACATTAATGCAGATGGTGAAGGTGATGTTTGGGTGATTCCGACTCCGTTGTGCAGTTTGAGGTGGAACTCCTTTCGTGGATCAGAGTGGTGGATGTGTGCAAAGATGGTGGCGTTATCAAGAAAATTGTGGAGCAGGGGAGTGGGAACGACCGCCCTTCTGATCTCGATGAAGTGCTTGTATCACGTGTGGCACTAGTTGATGGTACTGTTGTTGAAGAGACACCTGAAGGAGGAGTTGAGTTTTTCGTGAAGGATGGTCATCTTTTTCCGATTTTGCCAAAAGTGATCATGACTATGACGAGGGGAGAAAAGGCCGAATTAATTGTCCAACCTCAGTATGCCTTTGGGGAGACAGGAAGAGATTCTGGAACTGGGCTCTGTCGAATCCCACCAAATTCAGTACTGCATGCTAATATTGAATTGGTGTCCTTCAAGCCTGTGATAAATGTTACTGGTGACTCCAAGGTGCTTAAAAAGATATTGAAAGAAGGGGAGGGTGCTTTCACAGCCAATGAGGATGCACATGTTACTGTCAGCTTCACAGCTATGCTAGAAGATGGCACGGTATTTGAGAAAAGGAAAACTGGTGAAGAACAACCCTTGGAATTCATAACTGATGAGGAACAAGTGATTGTTGGTCTAGATCGAGCTGTGGCAACTATGAAGAAGGGTGAGAGGGCCATTATTTCCATACATCCTGAGTATGCATTTGGAAATGTTGAAGTGAAACGAGATCTTGCTATTGTTCCACCAGGCTCAAATGTAGTCTATGACGTTGAGATGCTGGATTTTATCAAGGAGAAAGCACCATGGGAATTGAATAGTAAGGAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATGTACTATTTAAAGGTGGCAATTACCTCCGAGCACAGAAGAAGTATGAACAGGCGGTTGATTTTCTTAGTGACGATGGATCCTTCGGGTATAGTGAGCAAAAGCAAGCCGATGCACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTAGTGGAGCAATCAAGCTATGTTCGCAGGTGCTTGATGTTGAATTTTGCAACGTGAAGGCTTTGTACAGACGAGCACAAGCATATATAGAAACTGGAGACTTCGTATTAGCAGATGTAGACATCAAGAAAGCTCTTGTGGCGGACCCACAAAACAGGGAGGTAAAGATAATTCAAAAGAAATTGAAGCAACTTCAAGCTGACAAAGACAAAAAAGATGCGAAGCTATACGAAAACATGTTTGCGTGTAAAACAAAGGACTCGTCTACGGCTATAAAGAGATTGAAGGTTGAGAAAGACGAGAGGGAAAACGAAGATGGAGCAAGAATGGAAGAGGACACAGTTGCTGATAGCGCAGTGATTTAA 1725 0.4557 MVVLSSEDEFDEEPGEVIESAPPQKVGEERQLRGLKKKLLRHGHGWETPNFNDVVTVHRVETLLDGAALGSSTWDTDQPLTFTLGNGDVPGLDRGITSMKKGEVACSHXCRWXRXCLGDSDSVVQFEVELLSWIRVVDVCKDGGVIKKIVEQGSGNDRPSDLDEVLVSRVALVDGTVVEETPEGGVEFFVKDGHLFPILPKVIMTMTRGEKAELIVQPQYAFGETGRDSGTGLCRIPPNSVLHANIELVSFKPVINVTGDSKVLKKILKEGEGAFTANEDAHVTVSFTAMLEDGTVFEKRKTGEEQPLEFITDEEQVIVGLDRAVATMKKGERAIISIHPEYAFGNVEVKRDLAIVPPGSNVVYDVEMLDFIKEKAPWELNSKEKIEVAGRKKEEGNVLFKGGNYLRAQKKYEQAVDFLSDDGSFGYSEQKQADALRVSCWLNGAACSLKLNDFSGAIKLCSQVLDVEFCNVKALYRRAQAYIETGDFVLADVDIKKALVADPQNREVKIIQKKLKQLQADKDKKDAKLYENMFACKTKDSSTAIKRLKVEKDERENEDGARMEEDTVADSAVI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5014g00003 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 104 IPR001179 GO:0003755
Vium5014g00003 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 172 249 IPR001179 GO:0003755
Vium5014g00003 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 276 369 IPR001179 GO:0003755
Vium5014g00003 574 FunFam Peptidylprolyl isomerase 377 532 - -
Vium5014g00003 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 280 372 IPR001179 GO:0003755
Vium5014g00003 574 FunFam Peptidylprolyl isomerase 253 374 - -
Vium5014g00003 574 SMART tpr_5 389 422 IPR019734 GO:0005515
Vium5014g00003 574 SMART tpr_5 472 505 IPR019734 GO:0005515
Vium5014g00003 574 SMART tpr_5 438 471 IPR019734 GO:0005515
Vium5014g00003 574 MobiDBLite consensus disorder prediction 547 566 - -
Vium5014g00003 574 Gene3D - 137 253 IPR046357 GO:0003755
Vium5014g00003 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 103 IPR001179 GO:0003755
Vium5014g00003 574 PANTHER PEPTIDYLPROLYL ISOMERASE 136 253 - -
Vium5014g00003 574 ProSiteProfiles TPR repeat profile. 472 505 IPR019734 GO:0005515
Vium5014g00003 574 MobiDBLite consensus disorder prediction 547 574 - -
Vium5014g00003 574 SUPERFAMILY FKBP-like 138 252 - -
Vium5014g00003 574 SUPERFAMILY TPR-like 383 534 IPR011990 GO:0005515
Vium5014g00003 574 SUPERFAMILY FKBP-like 8 136 - -
Vium5014g00003 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 162 252 IPR001179 GO:0003755
Vium5014g00003 574 SUPERFAMILY FKBP-like 258 389 - -
Vium5014g00003 574 Coils Coil 508 528 - -
Vium5014g00003 574 Gene3D - 254 374 IPR046357 GO:0003755
Vium5014g00003 574 Gene3D - 29 136 IPR046357 GO:0003755
Vium5014g00003 574 Gene3D Tetratricopeptide repeat domain 375 532 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5014g00003 Vium-Chr5014 23805 34509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5014g00003 25 535 Calmodulin-binding Proteins AT3G25230 54.111 1.22e-175 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5014g00003 K09571 - gmx:100798382 843.188