Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium500g00005 ATGGTCAAGTCTTGTTGTAGCATGTGCTTGTGTTTGGTCTTACTTTGTGTTTTCCTGTGCTTTGTGTCAACGCAATCAGCACCAGAAAGTGCCATTGTGACACAGGTTCCTGGTTTCAGTGGGACTCTACCTTCCAAGCACTATGCTGGGTATGTGAAAGTGGGTGAGAGTGGTGGGAAGAACTTGTTTTACTATTTTGTTGAATCACAGGGTAACCCTTCTGAGGACCCTGTGGTTCTGTGGCTTAATGGGGGACCAGGCTGCTCTAGCTTTGATGGATTCGTATATGAGCATGGACCTTTTAATTTTGAGGCAGCAAAGACAAAAGGGGGTCTTCCCACACTACATCTCAATCCATACAGCTGGTCAAAGGTTTCCAGTGTTATATATTTGGATTCTCCTGCTGGTGTGGGGTGGTCATACTCAAAGAATGAAACTGATTACATAACTGGAGACACAAAGACTGCCTCTGATTCACATGAGTTTCTTCTTAAGTGGTTTGAACTATACCCTGAGTTCCTTTCCAATCCGTTCTTCATTGCTGGAGAGTCCTATGCAGGAGTGTATGTGCCTACTCTTGCTTCTGAAGTTGTGAAAGGAATTGAGGCTGGTGTGGAGCCCCGACTAAATTTCAAGGGTTACATGGTTGGAAATGGTGTGACAGATGAAGAAATCGATGGCAATGCTCTTATTCCATTTGTACATGGGATGGGACTTATCTCAGATGACCTGTTTAAGGAGGTGAACAGTGAGTGCAATGGGAACTTTTATAATCCAACCAGTGAAAGTTGCTCTAGCAAGCTTGCAAAAGTTGATCAGTTGGTTGATGGGACAAACATTTACAATATCCTAGAACCATGCTATCACACCACAGAGGCAGTGAATATTACAGAATCCTATATTAGGTTGCCATCTAGCTTCCGGAAGTTGGGTGAGACTGAAAAACCTTTCCCAGTGAGGAAAAGAATGTTCGGTCGTGCTTGGCCCCTAAGAGCACCTGTCAGAGATGGAATTGTACCAACTTGGCCACAGCTGACGAGTTTACAACTTTCTCCACCATGCACGGATGATGAGCTTGCAAACGCATGGTTGAACAATGAAGAAGTCAGGACAGCAATTCATGTTGCACAGAAAAGTGTCGTCAGTAGTTGGGAAATATGCACAGACAGAATTTTATTTGATCATGATGCTGGGAGCATGATCAGCTACCACAAGAACTTAACTTCCAAAGGTTATAGAGCACTTATATTCAGTGGTGATCATGATATGTGTGTTCCATATACGGGGAGTGAGGCATGGACAAGATCTATTGGATACAAGATTGTTGATGAATGGAGGCCATGGTCTTCCAATGGTCAAGTTGCTGGGTACACACAAGGATATGACAAAAATCTTACTTTTCTGACCATAAAGGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTTACAAACGCTTTCTCGCTGGATTGCCGATATGA 1497 0.4362 MVKSCCSMCLCLVLLCVFLCFVSTQSAPESAIVTQVPGFSGTLPSKHYAGYVKVGESGGKNLFYYFVESQGNPSEDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKTKGGLPTLHLNPYSWSKVSSVIYLDSPAGVGWSYSKNETDYITGDTKTASDSHEFLLKWFELYPEFLSNPFFIAGESYAGVYVPTLASEVVKGIEAGVEPRLNFKGYMVGNGVTDEEIDGNALIPFVHGMGLISDDLFKEVNSECNGNFYNPTSESCSSKLAKVDQLVDGTNIYNILEPCYHTTEAVNITESYIRLPSSFRKLGETEKPFPVRKRMFGRAWPLRAPVRDGIVPTWPQLTSLQLSPPCTDDELANAWLNNEEVRTAIHVAQKSVVSSWEICTDRILFDHDAGSMISYHKNLTSKGYRALIFSGDHDMCVPYTGSEAWTRSIGYKIVDEWRPWSSNGQVAGYTQGYDKNLTFLTIKGSGHTVPEYKPREALDFYKRFLAGLPI 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium500g00005 498 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Vium500g00005 498 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 482 IPR001563 GO:0004185|GO:0006508
Vium500g00005 498 Gene3D - 351 497 - -
Vium500g00005 498 FunFam Carboxypeptidase 26 310 - -
Vium500g00005 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Vium500g00005 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 465 478 IPR001563 GO:0004185|GO:0006508
Vium500g00005 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Vium500g00005 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vium500g00005 498 FunFam Carboxypeptidase 353 497 - -
Vium500g00005 498 ProSitePatterns Serine carboxypeptidases, histidine active site. 465 482 IPR033124 GO:0004185
Vium500g00005 498 Gene3D alpha/beta hydrolase 25 319 IPR029058 -
Vium500g00005 498 Pfam Serine carboxypeptidase 37 494 IPR001563 GO:0004185|GO:0006508
Vium500g00005 498 FunFam Carboxypeptidase 400 495 - -
Vium500g00005 498 SUPERFAMILY alpha/beta-Hydrolases 33 497 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium500g00005 Vium-Chr500 109214 113770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium500g00005 359 498 Calmodulin-binding Proteins AT2G22960 47.143 5.81e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium500g00005 K16296 - gmx:100792057 909.442