Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5007g00004 ATGAACTCTCAGTCACAACAACAGCAACAAGGCAAACAGAAAAACCGAGAAGAGGAGGAGGAAGAAGAAAACCATTTGTTACATTCAGAATGCGAGTCAATACCGTTGTCTTCACCCCATGTATTACCCTCAAACTGGGAACATGCAGACAAAGAAGAAGAAGAAGAAGAAGAGAAAGACTCCGTGTATGCAGCCAAGGACAAGGTGCAGATATTTGACTTGGAGTCTTCCGGCGCAGCAGGGTCCACGGCGGTGCCGCCGTTTTCGTGGAGGAAGCTGTGGCTGTTCACGGGGCCAGGGTTGTTGATGAGCGTGGCGTTTTTGGACCCGGGGAACCTCGAAGGGGATCTTCAAGCTGGTGCGATTGCAGGGTACTCCTTGCTTTGGTTGTTGATGTGGTCCACCATCATGGGGTTGGTGATACAACTTCTGTCGGCGAGGCTCGGGGTGGCGACCGGGCGGCACCTGGCGGAGCTGTGCAGGGAGGAGTACTCCAATTGGGCAAGGTTGGTTCTGTGGATCTTGGCTGAGATGGCTCTCATTGCTGCTGATATTCAGGAGGTTATTGGCAGTGCCATTGCTTTCAAGATTCTTAGCCATGGCCTTATCCCCATTTGGGCTGGTGTGGTTATCACAGCCACGGATTGTTTTTTTTTTCTATTTCTCGAGAACTATGGAGTGAGGAAGTTGGAAGGAGTTTTCGCAGTTTTCATTGGAACTATGGGCCTTTCTTTTGCGTGGATGTTCTTTGATACAAACCCCAGTGAAGAAGAACTAATGATGGGTCTTTTAATCCCAAGACTTAGTTCAAAAACTCTTCGCCAGGCTGTGGAAATTGTGGGGTGTGTGATAACCCCACATAATGTGTTCCTCCATTCTGCATTGGTACAATCAAGGGATATTGATATCCGTAACAAAGGCCAGGTTCAAGAGGCTCTCAACTACTACTCAATTGAGTCCTCAGTTGCACTTTTAGTCACACTGTTGATCAATCTATCTGTGATAACAGTTTTTGCTAGAGTGTTCTATGGTACAGAACAGGCCAATGGCATAGGATTGGTAAATGCAGGGCAATATCTTGAGGAAAGGTATGGGGGAGGGTTGTTTCCAATTCTCTACATATGGGGTATTGGTTTATTAGCAGCTGGCCAAAGTAGTACCATAACTGGCACGTATGCTGGCCAGTTTATAACAGAGGGTTTTCTTAAGCTCAACATAAAGAAGTGGTTGAGGGCATTGATTACCAGAAGTTGTGCAATTGTTCCAACTATGATTTGTGCTATTGTTTTTAATACATCAGAAAGTTCATTGGACACCTTGAATGAATGGCTTAATGTGGTCCAGGCAATACAGATTCCTTTTGCTCTTATCCCCCTTCTTACTTTGGTGTCCAAAGAGGAGGTGATGGGAACCTTCAGAATAGGGCCTATAGTAGAGAAAGTGGCTTGGAGTGTGGCTGTGCTGGTAATAATGGTTTATGGATATATGTTATTAGATTTCTTCCTGGAAGAAGTAGATGGAGTATTGTTTGGTTTTGTGGTCTGCCTTGGTGCTGCAGCATGGATTTCATTTATTGTATATTTGGTTCAACACAGTGGTGCCATTCCTTCACTCATGACCAGGTCCCCTAATTCAAGAGGTTTTTTCTCTCTTTCTGGGAACTAA 1665 0.4541 MNSQSQQQQQGKQKNREEEEEEENHLLHSECESIPLSSPHVLPSNWEHADKEEEEEEEKDSVYAAKDKVQIFDLESSGAAGSTAVPPFSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLVIQLLSARLGVATGRHLAELCREEYSNWARLVLWILAEMALIAADIQEVIGSAIAFKILSHGLIPIWAGVVITATDCFFFLFLENYGVRKLEGVFAVFIGTMGLSFAWMFFDTNPSEEELMMGLLIPRLSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESSVALLVTLLINLSVITVFARVFYGTEQANGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMICAIVFNTSESSLDTLNEWLNVVQAIQIPFALIPLLTLVSKEEVMGTFRIGPIVEKVAWSVAVLVIMVYGYMLLDFFLEEVDGVLFGFVVCLGAAAWISFIVYLVQHSGAIPSLMTRSPNSRGFFSLSGN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5007g00004 554 MobiDBLite consensus disorder prediction 12 29 - -
Vium5007g00004 554 Coils Coil 1 22 - -
Vium5007g00004 554 Hamap Divalent metal cation transporter MntH [mntH]. 79 501 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 91 469 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 PRINTS Natural resistance-associated macrophage protein signature 172 198 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 PRINTS Natural resistance-associated macrophage protein signature 411 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 PRINTS Natural resistance-associated macrophage protein signature 202 221 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 PRINTS Natural resistance-associated macrophage protein signature 445 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 PRINTS Natural resistance-associated macrophage protein signature 276 299 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 PRINTS Natural resistance-associated macrophage protein signature 383 402 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 PRINTS Natural resistance-associated macrophage protein signature 227 248 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 Pfam Natural resistance-associated macrophage protein 114 475 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vium5007g00004 554 MobiDBLite consensus disorder prediction 1 62 - -
Vium5007g00004 554 NCBIfam Nramp family divalent metal transporter 98 467 - -
Vium5007g00004 554 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 17 530 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5007g00004 Vium-Chr5007 25918 33501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5007g00004 56 532 Inorganic Solute Cotransporters AT1G47240 73.904 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5007g00004 K21398 - gmx:100801411 974.926