Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5006g00003 ATGAGGAGAAAGAAGGGAAAACACACAGCTAAGAAAGACTTCTACTTTTCTCAAACCATCGATAAGGCTAATCATCGGTTCTGCGCGTACCAAACCGAAATCATGGTGGAAGATGGTGATGAGGTTGCAGTTGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCCGTTGTTCTTGATAAGGCAAGAGAGGCTAAGGGATTTGCCGGTAGATGGAAGATGATCATTGCAAAATTGGAACAGATCCCGTCACGATTATCAGATTTGTCAAGCCATCCGTGCTTCTCAAAAAATGCTTTATGCAAGGAGCAGTTGCAGGCTGTGTCAAAGACGCTTGGGGAAGCGATTGAATTAGCCGAGTTGTGTATGAAGCAAAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTAGACGCATTGACTGGGAAGCTTGATTTGAATTTGAGGGATTGTGGGCTTTTGATCAAAACTGGTGTGCTGGGTGAGGCTACTTTACCATTGGTCGTGTCAAGTTCTGTGGCAAAATCAGATGTTGCAATACACAACAACATAAGGGAATTGCTGGCGCGTCTTCAGATCGGGCACTTGGAAGCAAAGCACCAAGCTCTAGACAGCGTTGTTGAGGCCATGAAGGAAGATGAGAAGAACGTTTTAGCGGCTCTTGGTCGGAGCAACATTGCTGCTTTGGTTCAATTGCTTACAACTACCTCTGTCAGAATAAGAGAGAAAAAAGTTATTGTTATATGCTTGCTTGCAGAATCTAGTAGTTACGAAAATTGGCTAGTTTTTGAGGGAGTTCTGCCACCTCTTATAAGGCTTGTAGAATCTGGCAGTGCAGTGGGGAAGGAGAAGGCCACGATATCCCTTCAGAGGTTGTCTATGTCAGCCGAAACAGCTCGCGCAATCGTGGGACATGGTGGGGTCCCTCCATTGGTTGAACTTTGTCAAATTGGTGACTCTGTGTCACAGGCTTCGGCTGCTTGTACTCTGAAGAACATATCAGCTGTGCCTGAGGTGAGACAAACTTTGTCCGAAGAAGGGATTGTGAGGACCATGATCAATCTTCTTAACTGTGGTATTCTGTTAGGTTCAAAAGAGCATGCTGCAGAATGTTTGCAGAATCTCACTGCAAGCAACGAGAATCTAAGGAGGAGTGTCATATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCCGCTGTTGGAGCATTGAGGAATTTGGTCGGATCGGTCCCTGAGACATCCTTGGTCTCTCTCGGTTTGGTCCCCCGATTGGTTCACGTGTTAAAGTCGGGATCTTTAGGTGCTCAGCAAGCCGCCGTAGCTGCCATATGCAGAGTTTGCAGCTCGACAGACATGAAGAAAATGGTTGGTGAAGCTGGATGCATCCCTCTCATTGTGAAAATGCTTGAGGCTAAGTCAAACAGTGCTAGAGAGGTTGCTGCCCAAGCAATTGCAAGCCTGATGGTTGTGTCTCAGAATAGGAGAGAAGTCAAGAAGGATGATAAAAGTGTGCCAAATTTGGTTCAGTTGCTCGATCCAAGTCCTCAGAACACTGCAAAAAAATATGCAGTCACATGCCTCGGATCACTTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCGTATGGGGCTATTGGGTATCTCAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTGCATGAACGGTTGGAAAGAGGGAAATTGAAAAGTTTTTTTAGCAAGAAATAG 1782 0.4534 MRRKKGKHTAKKDFYFSQTIDKANHRFCAYQTEIMVEDGDEVAVDARSTEDWLLHAQELVPVVLDKAREAKGFAGRWKMIIAKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCMKQKYEGKLRMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLVVSSSVAKSDVAIHNNIRELLARLQIGHLEAKHQALDSVVEAMKEDEKNVLAALGRSNIAALVQLLTTTSVRIREKKVIVICLLAESSSYENWLVFEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARAIVGHGGVPPLVELCQIGDSVSQASAACTLKNISAVPEVRQTLSEEGIVRTMINLLNCGILLGSKEHAAECLQNLTASNENLRRSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVPETSLVSLGLVPRLVHVLKSGSLGAQQAAVAAICRVCSSTDMKKMVGEAGCIPLIVKMLEAKSNSAREVAAQAIASLMVVSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLKSFFSKK 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5006g00003 593 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 46 591 - -
Vium5006g00003 593 Gene3D - 180 365 IPR011989 -
Vium5006g00003 593 Gene3D - 366 576 IPR011989 -
Vium5006g00003 593 SMART arm_5 383 422 IPR000225 GO:0005515
Vium5006g00003 593 SMART arm_5 463 503 IPR000225 GO:0005515
Vium5006g00003 593 SMART arm_5 300 340 IPR000225 GO:0005515
Vium5006g00003 593 SMART arm_5 423 462 IPR000225 GO:0005515
Vium5006g00003 593 SMART arm_5 504 546 IPR000225 GO:0005515
Vium5006g00003 593 SMART arm_5 341 382 IPR000225 GO:0005515
Vium5006g00003 593 SMART arm_5 218 258 IPR000225 GO:0005515
Vium5006g00003 593 SUPERFAMILY ARM repeat 188 570 IPR016024 -
Vium5006g00003 593 Pfam Armadillo/beta-catenin-like repeat 304 340 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5006g00003 Vium-Chr5006 43203 45884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5006g00003 433 576 U-box Gene Family AT3G54790 28.472 1.99e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5006g00003 - - gmx:100781453 976.081