Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5006g00002 ATGGTGGAAGATGGTGATGAGGTTGCAGTTGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCCGTTGTTCTTGATAAGGCAAGAGAGGCTAAGGGATTTGCCGGTAGATGGAAGATGATCATTGCAAAATTGGAACAGATCCCGTCACGATTATCAGATTTGTCAAGCCATCCGTGCTTCTCAAAAAATGCTTTATGCAAGGAGCAGTTGCAGGCTGTGTCAAAGACGCTTGGGGAAGCGATTGAATTAGCCGAGTTGTGTATGAAGCAAAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTAGACGCATTGACTGGGAAGCTTGATTTGAATTTGAGGGATTGTGGGCTTTTGATCAAAACTGGTGTGCTGGGTGAGGCTACTTTACCATTGGTCGTGTCAAGTTCTGTGGCAAAATCAGATGTTGCAATACACAACAACATAAGGGAATTGCTGGCGCGTCTTCAGATCGGGCACTTGGAAGCAAAGCACCAAGCTCTAGACAGCGTTGTTGAGGCCATGAAGGAAGATGAGAAGAACGTTTTAGCGGCTCTTGGTCGGAGCAACATTGCTGCTTTGGTTCAATTGCTTACAACTACCTCTGTCAGAATAAGAGAGAAAAAAGTTATTGTTATATGCTTGCTTGCAGAATCTAGTAGTTACGAAAATTGGCTAGTTTTTGAGGGAGTTCTGCCACCTCTTATAAGGCTTGTAGAATCTGGCAGTGCAGTGGGGAAGGAGAAGGCCACGATATCCCTTCAGAGGTTGTCTATGTCAGCCGAAACAGCTCGCGCAATCGTGGGACATGGTGGGGTCCCTCCATTGGTTGAACTTTGTCAAATTGGTGACTCTGTGTCACAGGCTTCGGCTGCTTGTACTCTGAAGAACATATCAGCTGTGCCTGAGGTGAGACAAACTTTGTCCGAAGAAGGGATTGTGAGGACCATGATCAATCTTCTTAACTGTGGTATTCTGTTAGGTTCAAAAGAGCATGCTGCAGAATGTTTGCAGAATCTCACTGCAAGCAACGAGAATCTAAGGAGGAGTGTCATATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCCGCTGTTGGAGCATTGAGGAATTTGGTCGGATCGGTCCCTGAGACATCCTTGGTCTCTCTCGGTTTGGTCCCCCGATTGGTTCACGTGTTAAAGTCGGGATCTTTAGGTGCTCAGCAAGCCGCCGTAGCTGCCATATGCAGAGTTTGCAGCTCGACAGACATGAAGAAAATGGTTGGTGAAGCTGGATGCATCCCTCTCATTGTGAAAATGCTTGAGGCTAAGTCAAACAGTGCTAGAGAGGTTGCTGCCCAAGCAATTGCAAGCCTGATGGTTGTGTCTCAGAATAGGAGAGAAGTCAAGAAGGATGATAAAAGTGTGCCAAATTTGGTTCAGTTGCTCGATCCAAGTCCTCAGAACACTGCAAAAAAATATGCAGTCACATGCCTCGGATCACTTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCGTATGGGGCTATTGGGTATCTCAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTGCATGAACGGTTGGAAAGAGGGAAATTGAAAAGTTTTTTTAGCAAGAAATAG 1680 0.4554 MVEDGDEVAVDARSTEDWLLHAQELVPVVLDKAREAKGFAGRWKMIIAKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCMKQKYEGKLRMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLVVSSSVAKSDVAIHNNIRELLARLQIGHLEAKHQALDSVVEAMKEDEKNVLAALGRSNIAALVQLLTTTSVRIREKKVIVICLLAESSSYENWLVFEGVLPPLIRLVESGSAVGKEKATISLQRLSMSAETARAIVGHGGVPPLVELCQIGDSVSQASAACTLKNISAVPEVRQTLSEEGIVRTMINLLNCGILLGSKEHAAECLQNLTASNENLRRSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVPETSLVSLGLVPRLVHVLKSGSLGAQQAAVAAICRVCSSTDMKKMVGEAGCIPLIVKMLEAKSNSAREVAAQAIASLMVVSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKLKSFFSKK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5006g00002 559 Gene3D - 146 332 IPR011989 -
Vium5006g00002 559 Gene3D - 333 393 IPR011989 -
Vium5006g00002 559 SMART arm_5 349 388 IPR000225 GO:0005515
Vium5006g00002 559 SMART arm_5 429 469 IPR000225 GO:0005515
Vium5006g00002 559 SMART arm_5 266 306 IPR000225 GO:0005515
Vium5006g00002 559 SMART arm_5 389 428 IPR000225 GO:0005515
Vium5006g00002 559 SMART arm_5 470 512 IPR000225 GO:0005515
Vium5006g00002 559 SMART arm_5 307 348 IPR000225 GO:0005515
Vium5006g00002 559 SMART arm_5 184 224 IPR000225 GO:0005515
Vium5006g00002 559 Gene3D - 394 538 IPR011989 -
Vium5006g00002 559 SUPERFAMILY ARM repeat 154 536 IPR016024 -
Vium5006g00002 559 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 557 - -
Vium5006g00002 559 Pfam Armadillo/beta-catenin-like repeat 270 306 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5006g00002 Vium-Chr5006 42247 45884 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5006g00002 399 542 U-box Gene Family AT3G54790 28.472 2.03e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5006g00002 - - gmx:100781453 976.081