Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5003g00002 ATGGCATCTCAGACGAGGAAGAGAGTGGACGCGGTTGATTCTCGCTCTGCTTCCGTTCTTGTTCGCGCTAAAGATGGCAGTGCTTTTTCGCGATGCGGCGATTGCAAGAAGAATGTGCCAGTGGCGCTTATCGACATGCACAATTGCAGCCTTGAGGCTAAAATCAAAATGAACCTTGATGCGCAAGTTGTGGACCAGGCTGCCGACGCTAAGAAGCAAGAGAGGAAGAAACCGAAATCTAAAGAGCCAAAGGCAAAAAAGGCTAAGGTAGAGAAGGGAAAGAAGGTCAAGGATCCTAACAAGCCTAAGCGTCCTCCCACGGCCTTCTTTGTCTTTTTGGATGAGTTTAGGAAAACGTTTAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGGGTTGGGAAGGAGGCTGGCGAGAAGTGGAGGTCAATGAGTGAGGAAGATAAGAAGCCTTATTTGGATAAGGTTGCTGAACTCAAGGCAGAATATGAGAAGGCTATGGAAAGCTATAAAGCCGGTGAAGTTGAAGAAGATGAAGCTGGATCTGATAAGGAAACTGCTGTAAAAGAAGTGGAAGAGGAGTTAACCGATGAAGAGTAG 600 0.4617 MASQTRKRVDAVDSRSASVLVRAKDGSAFSRCGDCKKNVPVALIDMHNCSLEAKIKMNLDAQVVDQAADAKKQERKKPKSKEPKAKKAKVEKGKKVKDPNKPKRPPTAFFVFLDEFRKTFKEANPDSKDVKRVGKEAGEKWRSMSEEDKKPYLDKVAELKAEYEKAMESYKAGEVEEDEAGSDKETAVKEVEEELTDEE 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5003g00002 199 CDD HMG-box_AtHMGB1-like 103 163 - -
Vium5003g00002 199 MobiDBLite consensus disorder prediction 84 102 - -
Vium5003g00002 199 MobiDBLite consensus disorder prediction 170 191 - -
Vium5003g00002 199 SUPERFAMILY HMG-box 93 175 IPR036910 -
Vium5003g00002 199 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Vium5003g00002 199 Coils Coil 156 176 - -
Vium5003g00002 199 MobiDBLite consensus disorder prediction 170 199 - -
Vium5003g00002 199 MobiDBLite consensus disorder prediction 66 106 - -
Vium5003g00002 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 193 - -
Vium5003g00002 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Vium5003g00002 199 Gene3D High mobility group box domain 85 187 IPR036910 -
Vium5003g00002 199 SMART hmgende2 101 172 IPR009071 -
Vium5003g00002 199 MobiDBLite consensus disorder prediction 127 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5003g00002 Vium-Chr5003 2251 3914 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vium5003g00002 HMG_box 9.7e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5003g00002 K25507 - gmx:100810345 267.7