Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5003g00001 ATGGCATCTCAGACGAGGAAGAGAGTGGACGCGGTTGATTCTCGCTCTGCTTCCGTTCTTGTTCGCGCTAAAGATGGCAGTGCTTTTTCGCGATGCGGCGATTGCAAGAAGAATGTGCCAGTGGCGCTTATCGACATGCACAATTGCAGCCTTGAGGCTAAAATCAAAATGAACCTTGATGCGCAAGTTGTGGACCAGGCTGCCGACGCTAAGAAGCAAGAGAGGAAGAAACCGAAATCTAAAGAGCCAAAGGCAAAAAAGGCTAAGGTAGAGAAGGGAAAGAAGGTCAAGGATCCTAACAAGCCTAAGCGTCCTCCCACGGCCTTCTTTGTCTTTTTGGATGAGTTTAGGAAAACGTTTAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGGGATAAGAAGCCTTATTTGGATAAGGTTGCTGAACTCAAGGCAGAATATGAGAAGGCTATGGAAAGCTATAAAGCCGGTGAAGTTGAAGAAGATGAAGCTGGATCTGATAAGGAAACTGCTGTAAAAGAAGTGGAAGAGGAGTTAACCGATGAAGAGTAG 555 0.4541 MASQTRKRVDAVDSRSASVLVRAKDGSAFSRCGDCKKNVPVALIDMHNCSLEAKIKMNLDAQVVDQAADAKKQERKKPKSKEPKAKKAKVEKGKKVKDPNKPKRPPTAFFVFLDEFRKTFKEANPDSKDVKRDKKPYLDKVAELKAEYEKAMESYKAGEVEEDEAGSDKETAVKEVEEELTDEE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5003g00001 184 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 4 179 - -
Vium5003g00001 184 MobiDBLite consensus disorder prediction 66 106 - -
Vium5003g00001 184 Coils Coil 141 161 - -
Vium5003g00001 184 MobiDBLite consensus disorder prediction 84 102 - -
Vium5003g00001 184 MobiDBLite consensus disorder prediction 155 184 - -
Vium5003g00001 184 Pfam HMG (high mobility group) box 102 128 IPR009071 -
Vium5003g00001 184 SUPERFAMILY HMG-box 93 160 IPR036910 -
Vium5003g00001 184 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 156 IPR009071 -
Vium5003g00001 184 SMART hmgende2 101 157 IPR009071 -
Vium5003g00001 184 Gene3D High mobility group box domain 87 156 IPR036910 -
Vium5003g00001 184 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5003g00001 Vium-Chr5003 2248 3914 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vium5003g00001 HMG_box 6.6e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5003g00001 K25507 - gmx:100810345 229.565