Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4991g00001 ATGACAAAAGCCAATGCGAAGAACAAATCCGCCGTCGCGCTCCACCCTCCTTACTTCCAGATGATTGCCGACGCCATAACGTCGTTGAAGGAACGCACGGGTTCGAGTCAGCCTGCGATAGACAAGTTTGTCGAGGACAAGCACAGCAAAGGGCTTCCTCCCAACTTCCGGAAACTTCTGTCCGTTCAGTTAAAAAGTTTGGTCAAATTGGAGAAGCTCTACAAGGTCAAGAACTCCTACAAACTATCTTCTCCACATACTGAGAAACCAAAAACCGCTCCGAAAGAGAAGAAAGTGACGGAGAAGACGAAGAGGCTGAGTCAGGTGAAGACGCCCGAAACTCTGAAAAAGAAGAAAGCCCCCAGCACGAAGAAATATGTGGCGGCAGCGGCAGCCTCTGGAGCAGGTAAAGTGAAACGTTTGAGTCAGGTGAAGACTCCCGAGACCATGAAGAAGAAGCCCAATATAACACCTGCCAAACGCAAGGGCACTCCCAAACCCTCCAGGGTCAACAAGAAAGCTAGGAAATGA 531 0.4972 MTKANAKNKSAVALHPPYFQMIADAITSLKERTGSSQPAIDKFVEDKHSKGLPPNFRKLLSVQLKSLVKLEKLYKVKNSYKLSSPHTEKPKTAPKEKKVTEKTKRLSQVKTPETLKKKKAPSTKKYVAAAAASGAGKVKRLSQVKTPETMKKKPNITPAKRKGTPKPSRVNKKARK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4991g00001 176 MobiDBLite consensus disorder prediction 80 120 - -
Vium4991g00001 176 PANTHER HISTONE H1 6 168 - -
Vium4991g00001 176 CDD H15 15 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium4991g00001 176 Gene3D - 9 106 IPR036388 -
Vium4991g00001 176 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 14 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium4991g00001 176 MobiDBLite consensus disorder prediction 80 176 - -
Vium4991g00001 176 SUPERFAMILY "Winged helix" DNA-binding domain 15 96 IPR036390 -
Vium4991g00001 176 SMART h15plus2 12 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vium4991g00001 176 Pfam linker histone H1 and H5 family 15 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4991g00001 Vium-Chr4991 9812 10788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4991g00001 16 85 Single Myb Histone (SMH) Gene Family AT1G72740 38.571 9.78e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4991g00001 K11275 - gmx:100306187 196.438