Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium498g00002 ATGGAGATCAAGAGTAGAGACAGGAGGCAAGTGTCAATTGAGAAGGTGAGGAGAGACAGTCCGGTTGAAGTAGAAGAGGAGGAAGAGGAGGAGGATGAAAGTGTGGCTGGCGTTGAGGGCTGTCTTGCAGAAGATGAGAGGAAGAAGGGTGGGGCAGGTGGTGGGAGAAGAGGGTCTACTGGAGGTGGAGTTTCTCCACCTTCTTGTCAAGCAGAGATGTGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCACAAGGTGTGTGAGCTTCATTCCAAGGCACCTTTTGTGATGGTTGCAGGAATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAATTTGACGAAGCAAAAAGAAGCTGCCGGAGACGCTTGGCAAGACATAATGAACGGCGCCGGAAGAGCAATGCTGAGACTTGCAATGAAGGATGCAGCAGCAGCAGCAAAGGACAGCAGCCTACAGAAAGCCTCTGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGGTTACAGGTCCTTCAACTTCAGATGA 576 0.5069 MEIKSRDRRQVSIEKVRRDSPVEVEEEEEEEDESVAGVEGCLAEDERKKGGAGGGRRGSTGGGVSPPSCQAEMCGADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSSSSKGQQPTESLCRNADDWGRIQMNMARNSGYRSFNFR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium498g00002 191 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
Vium498g00002 191 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
Vium498g00002 191 MobiDBLite consensus disorder prediction 1 22 - -
Vium498g00002 191 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Vium498g00002 191 Coils Coil 119 139 - -
Vium498g00002 191 MobiDBLite consensus disorder prediction 1 68 - -
Vium498g00002 191 MobiDBLite consensus disorder prediction 23 39 - -
Vium498g00002 191 MobiDBLite consensus disorder prediction 147 165 - -
Vium498g00002 191 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 47 156 IPR044817 GO:0003677
Vium498g00002 191 MobiDBLite consensus disorder prediction 144 165 - -
Vium498g00002 191 Pfam SBP domain 69 142 IPR004333 GO:0003677
Vium498g00002 191 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium498g00002 Vium-Chr498 17467 18791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium498g00002 55 147 SBP-box Gene Family AT1G53160 66.667 4.56e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium498g00002 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium498g00002 - - gmx:100305703 280.796