Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4989g00040 ATGGAAGAGAAGAAGAGAAATGAAGCAGACGAAGCAAAGAAGAAGAAGAACAAGAAACGAGAGAGTGAGGAGAAGCAGCGAATGTACCGTGGGGTACGCATGCGTCAGTGGGGTAAATGGGTGTCGGAAATAAGAGAGCCCAAAAAAAAGTCCAGAATCTGGCTCGGCACGTTCCCCACGCCAGAAATGGCGGCTCGAGCCCACGATGTGGCCGCGCTCACTATCAAAGGCACTTCCGCTTTCCTCAATTTCCCCGAACTAGCCTCACACCTTCCGCGCCCACCCACCACTTCTCCTAAAGACATTCAAGCCGCCGCCGCCGAAGCTGCTGCACTCAATTGAGACGCCCAGCCTCAGGCCCGAGCACAAGCCCGAGCCCAAGCCCAGATTATGCCCGATGGGGATGACGCGTTCTTGGACCTCCCTGATCTTTTAGCAGACTCAAGTCAGAGTGCAGGTGGCTTTGGTTACTCTGCGTCGTGGTTCGTAGCCGCACCTGAACATCTTGACTCTGCTTTTCGGCTCGATGACCCTCCTTTCCCCTGGGACTCTTCACTTTAA 561 0.5472 MEEKKRNEADEAKKKKNKKRESEEKQRMYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALTIKGTSAFLNFPELASHLPRPPTTSPKDIQAAAAEAAALNXDAQPQARAQARAQAQIMPDGDDAFLDLPDLLADSSQSAGGFGYSASWFVAAPEHLDSAFRLDDPPFPWDSSL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4989g00040 186 Pfam AP2 domain 29 77 IPR001471 GO:0003700|GO:0006355
Vium4989g00040 186 Coils Coil 1 26 - -
Vium4989g00040 186 MobiDBLite consensus disorder prediction 1 27 - -
Vium4989g00040 186 CDD AP2 29 87 IPR001471 GO:0003700|GO:0006355
Vium4989g00040 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 148 - -
Vium4989g00040 186 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Vium4989g00040 186 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Vium4989g00040 186 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Vium4989g00040 186 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Vium4989g00040 186 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Vium4989g00040 186 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Vium4989g00040 186 FunFam Ethylene-responsive transcription factor 2 27 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4989g00040 Vium-Chr4989 208000 208928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4989g00040 11 157 AP2-EREBP Transcription Factor Family AT4G16750 60.544 1.31e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium4989g00040 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4989g00040 - - gmx:100817503 229.95