Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4989g00039 ATGGCATCCCCCAAGAAAACTAACAGCAGAGGAGCATGGACCGCGGAGGAAGATCAGAGACTAGCTCAATGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTATTGCAGTTAAATCAGGACTAAACAGATGTGGAAAAAGCTGCAGGTTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGCAACATATCAGTTGAAGAAGAAGATTTGATTATTAGGCTTCACAAACTGCTAGGAAACAGGTGGGCATTGATAGCTAAGAGACTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCATCACAAAAAGGTGAAACCAGAAACTTCAATGGCGCAACCGACAAATTCGACTCAGAATACCGAGGAAAAAGTAACAGTAGAGCATAAAGTAGCCACTGATGATGGAAATGGATACTCAGAAGTTAACTTTGATTTCAACGAATTCTTCAATTTCTCCATTGAAGGACTCTATTCGTTCGATTGGTTCAGGAGTTCTTAA 540 0.4019 MASPKKTNSRGAWTAEEDQRLAQCIEIHGAKRWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWALIAKRLPGRTDNEIKNYWNTCLCKKVNHHKKVKPETSMAQPTNSTQNTEEKVTVEHKVATDDGNGYSEVNFDFNEFFNFSIEGLYSFDWFRSS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4989g00039 179 CDD SANT 12 57 IPR001005 -
Vium4989g00039 179 Gene3D - 67 143 - -
Vium4989g00039 179 Gene3D - 10 62 - -
Vium4989g00039 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Vium4989g00039 179 SMART sant 9 59 IPR001005 -
Vium4989g00039 179 SMART sant 62 110 IPR001005 -
Vium4989g00039 179 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Vium4989g00039 179 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Vium4989g00039 179 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 5 137 - -
Vium4989g00039 179 FunFam Transcription factor TT2 66 138 - -
Vium4989g00039 179 MobiDBLite consensus disorder prediction 118 138 - -
Vium4989g00039 179 FunFam MYB-related transcription factor 9 62 - -
Vium4989g00039 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vium4989g00039 179 SUPERFAMILY Homeodomain-like 10 104 IPR009057 -
Vium4989g00039 179 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Vium4989g00039 179 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vium4989g00039 179 CDD SANT 67 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4989g00039 Vium-Chr4989 193684 194573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4989g00039 10 127 MYB Transcription Factor Family AT5G40330 60.331 7.50e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4989g00039 Myb_DNA-binding 9.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4989g00039 K09422 - gmx:100816449 298.901