Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4989g00031 ATGGTGAAGATCACTCTTGGTAGCTTTGAAGACTCTTTTAGCGCTGCCTCTCTCAAGGCCTATTTTGCAGAGCTTCATGCCACTCTAATTTTCGTCTTCGCTGGTGTTGGATCAGCCATTGCTTACAACGAGGTCACGAAAGATGCTGCATTGGATCCAACGGGGCTGGTGGCAGTAGCGGTGGCACACGCATTCGCACTGTTTGTAGGTGTGTCTGTTGCAGCCAACAGCTCAGGTGGACATTTGAACCCAGCTGTCACATTTGGATTGGCTGTCGGAGGAAACATCACCCTCCTAACTGGTTTCTTGTACTGGGTTGCTCAATTGTTGGGTTCTATCCTTGCATGTCTCCTCCTCAATTTGGTTACCGCCAAGAGCATTCCAACCCATGGACTGGCTTATGGTGTGAACGCTTTCCAAGGTGTGGTGTTTGAAATTATTATCACTTTTGCGTTGGTTTACACAGTGTATGCAACTGCAGCTGACCCTAAAAAGGGCTCATTGGGCACCATTGCACCCATTGCTATTGGGTTCATTGTGGGTGCCAACATCCTAGCTGCTGGCCCATTCAGTGGTGGGTCCATGAACCCGGCCCGCTCATTTGGCCCAGCTGTGATTAGTGGAAACTTCGCTGATAACTGGATCTACTGGGTTGGCCCATTGATTGGAGGAGGTTTGGCTGGGCTCATTTATGGAGATGTCTTCATTGGTTCCTATGCCGCTGTCCCAGCCTCCGAAACCTATCCTTAA 750 0.4973 MVKITLGSFEDSFSAASLKAYFAELHATLIFVFAGVGSAIAYNEVTKDAALDPTGLVAVAVAHAFALFVGVSVAANSSGGHLNPAVTFGLAVGGNITLLTGFLYWVAQLLGSILACLLLNLVTAKSIPTHGLAYGVNAFQGVVFEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVISGNFADNWIYWVGPLIGGGLAGLIYGDVFIGSYAAVPASETYP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4989g00031 249 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4989g00031 249 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4989g00031 249 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4989g00031 249 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4989g00031 249 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4989g00031 249 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4989g00031 249 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Vium4989g00031 249 SUPERFAMILY Aquaporin-like 16 236 IPR023271 -
Vium4989g00031 249 NCBIfam MIP family channel protein 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4989g00031 249 Gene3D Glycerol uptake facilitator protein. 2 242 IPR023271 -
Vium4989g00031 249 Pfam Major intrinsic protein 14 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4989g00031 249 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4989g00031 249 PANTHER AQUAPORIN-8 4 237 IPR034294 -
Vium4989g00031 249 FunFam Probable aquaporin TIP1-1 2 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4989g00031 Vium-Chr4989 144857 147041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4989g00031 1 246 Major Intrinsic Protein MIP AT5G47450 76.923 5.38e-134 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4989g00031 K09873 - gmx:100527333 427.943