Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4989g00017 ATGAGTAGGGGAACTATAGAAGATGTGGCAATTATAGGAGGATTGGTTGGAGTCCAATTTATCTATGCAGGGAATGCTGTGTTCATGGGTTATGCATTATCATTAGGCTTCAGCTCTCTCACCATTATCATTTTGACTTCTTTGGCTACATTCCTTGTTCTGTTCCCCGTTTCATTTTTCTTTGAAAGGTTCTTTCTCTCTGCTTCCAACTTCTATATAAATCATAAAAAGGCTTCTGCTTTTTTGCTTGGATTGAATTTCTTGAAGATTAATTTATGTTGCATCTATTGCAGGAGCAAGTGGCCGAAGAATTGTGATTTCAAGTTGATTAAACAGCTATTGTGTCTATCGTTTGGAGGACTGTTGTTCCAGTATTTATTCCTCAAGGGACTCGATCTAACTTCGCCAGCAATGGGAACTGCTATGCCAAACATTGCCCCAGGTCTTATCTTCATCATTGCATGGATTTCTGGGTTAGAGAAAGTGAACTTAAACAATCAGTATAGCAAAGTAAAAATCATGGGAACATTGCTTTGTGTCTTGGGAGCTCTCACAATGAGTATAATGCAAAGCATTTCGACTGGTGCACCCGAGCAAAAGACTCCATCAGGTTTTGTCTTCAACACACAAAAGATGATCGGTTGCTTCTATCTCGTGGTTGCAGTCGTGATTTTGTCGAGCAACGTCGTTCTGCAGGCTTTTACTCTTGGAGATTTTCCGGCACCGATGTCCTTGGGTGCAATAACGTCCTTGTTGAGCGCATTCATGACTGCAACCGTTCAGGTGCTTGAAAAACACAGGCTGAAAACTGGGCGGCTACTTCTGAGGTCTGGAAATTTAATTGGCTATTTTATTATGGCAGGTGCTGTGAGTGGAATATGCCTGAGTTTCAACGGGTGGGCACTGAAGAAAAAAGGGCCAGTTTTTGTCTCCATGTTCAGCCCCATTGGTACAGTGTGCTCTGTCATTTTCGCGGTTATTAAACTTGGAGAAAGTATGAGTGCCGGAAGTCTTGGAGGCATGTTTCTCATGTTCACTGGACTCTACTTGGTTCTCTGGGCCAAAGGGGAAGAAGGACTGCCAAATGGAGATAGCTTAGAGAGTGAGTTTGACATAGAGAGGCCTCTTTTGTGTTAA 1137 0.4248 MSRGTIEDVAIIGGLVGVQFIYAGNAVFMGYALSLGFSSLTIIILTSLATFLVLFPVSFFFERFFLSASNFYINHKKASAFLLGLNFLKINLCCIYCRSKWPKNCDFKLIKQLLCLSFGGLLFQYLFLKGLDLTSPAMGTAMPNIAPGLIFIIAWISGLEKVNLNNQYSKVKIMGTLLCVLGALTMSIMQSISTGAPEQKTPSGFVFNTQKMIGCFYLVVAVVILSSNVVLQAFTLGDFPAPMSLGAITSLLSAFMTATVQVLEKHRLKTGRLLLRSGNLIGYFIMAGAVSGICLSFNGWALKKKGPVFVSMFSPIGTVCSVIFAVIKLGESMSAGSLGGMFLMFTGLYLVLWAKGEEGLPNGDSLESEFDIERPLLC 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4989g00017 378 PANTHER WAT1-RELATED PROTEIN 14 358 IPR030184 GO:0016020|GO:0022857
Vium4989g00017 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 96 188 - -
Vium4989g00017 378 Pfam EamA-like transporter family 212 352 IPR000620 GO:0016020
Vium4989g00017 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 276 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4989g00017 Vium-Chr4989 83012 85280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4989g00017 1 369 Nodulin-like Gene Family AT5G47470 52.022 1.72e-125 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4989g00017 - - gmx:100784734 486.108