Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4989g00016 ATGAGTAGGGGAACTATAGAAGATGTGGCAATTATAGGAGGATTGGTTGGAGTCCAATTTATCTATGCAGGGAATGCTGTGTTCATGGGTTATGCATTATCATTAGGCTTCAGCTCTCTCACCATTATCATTTTGACTTCTTTGGCTACATTCCTTGTTCTGTTCCCCGTTTCATTTTTCTTTGAAAGGAGCAAGTGGCCGAAGAATTGTGATTTCAAGTTGATTAAACAGCTATTGTGTCTATCGTTTGGAGGACTGTTGTTCCAGTATTTATTCCTCAAGGGACTCGATCTAACTTCGCCAGCAATGGGAACTGCTATGCCAAACATTGCCCCAGGTCTTATCTTCATCATTGCATGGATTTCTGGGTTAGAGAAAGTGAACTTAAACAATCAGTATAGCAAAGTAAAAATCATGGGAACATTGCTTTGTGTCTTGGGAGCTCTCACAATGAGTATAATGCAAAGCATTTCGACTGGTGCACCCGAGCAAAAGACTCCATCAGGTTTTGTCTTCAACACACAAAAGATGATCGGTTGCTTCTATCTCGTGGTTGCAGTCGTGATTTTGTCGAGCAACGTCGTTCTGCAGGCTTTTACTCTTGGAGATTTTCCGGCACCGATGTCCTTGGGTGCAATAACGTCCTTGTTGAGCGCATTCATGACTGCAACCGTTCAGGTGCTTGAAAAACACAGGCTGAAAACTGGGCGGCTACTTCTGAGGTCTGGAAATTTAATTGGCTATTTTATTATGGCAGGTGCTGTGAGTGGAATATGCCTGAGTTTCAACGGGTGGGCACTGAAGAAAAAAGGGCCAGTTTTTGTCTCCATGTTCAGCCCCATTGGTACAGTGTGCTCTGTCATTTTCGCGGTTATTAAACTTGGAGAAAGTATGAGTGCCGGAAGTCTTGGAGGCATGTTTCTCATGTTCACTGGACTCTACTTGGTTCTCTGGGCCAAAGGGGAAGAAGGACTGCCAAATGGAGATAGCTTAGAGAGTGAGTTTGACATAGAGAGGCCTCTTTTGTGTTAA 1032 0.436 MSRGTIEDVAIIGGLVGVQFIYAGNAVFMGYALSLGFSSLTIIILTSLATFLVLFPVSFFFERSKWPKNCDFKLIKQLLCLSFGGLLFQYLFLKGLDLTSPAMGTAMPNIAPGLIFIIAWISGLEKVNLNNQYSKVKIMGTLLCVLGALTMSIMQSISTGAPEQKTPSGFVFNTQKMIGCFYLVVAVVILSSNVVLQAFTLGDFPAPMSLGAITSLLSAFMTATVQVLEKHRLKTGRLLLRSGNLIGYFIMAGAVSGICLSFNGWALKKKGPVFVSMFSPIGTVCSVIFAVIKLGESMSAGSLGGMFLMFTGLYLVLWAKGEEGLPNGDSLESEFDIERPLLC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4989g00016 343 Pfam EamA-like transporter family 17 152 IPR000620 GO:0016020
Vium4989g00016 343 Pfam EamA-like transporter family 177 317 IPR000620 GO:0016020
Vium4989g00016 343 PANTHER WAT1-RELATED PROTEIN 14 323 IPR030184 GO:0016020|GO:0022857
Vium4989g00016 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 153 - -
Vium4989g00016 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4989g00016 Vium-Chr4989 83012 85280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4989g00016 1 334 Nodulin-like Gene Family AT5G47470 57.440 4.23e-133 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4989g00016 - - gmx:100784734 503.827