Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4989g00015 ATGCTTGTTACCTACTCCTTTTTAAGTTCCCAAATACCCCAAAACCAAACCAAACCAAACCGAACGAAACGTATCTCTGAGAGCATTGAGATGGAGCGCCACAAATGCAAGCTCTGTTCGAGAACATTCGCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACTCTTCCTCTTCCTCCCAAACCCCAACCTCTTCCTCAATCTATTAACACTTTCTCTTCCAATTCATCTTCACGTCAAGACATAGAAGAAGACCCTCATAATGAACAACAACAAAAGGCTCTCGTCAACTACGCCTTGCGAGAGAATCCCAAGAAATGTTTCAGGCTCGCAGATCCCGAGTTCGACTCCGGCGCCGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACCCGCCGACGATCCAAGCGCCCACGCAGGCCCGCCAATTCCCAACCCAAGGCCCGGCCCAAACTCAGCTTCATGGAGTCCCCCGAGCCCGTGAGCTCCGTCTCCGACACTTCCCCCGAAGAAGACGTGGCCATGTGTCTCATGATGCTGTCCAGAGACCGTTGGAGCAAGAACACCCACGCTGCTGTCGACAACAACAACCCCGTGGAAGACGAAGAAGAGAGATCACCGGAAGAGATCAAGTTCAGAAGAGTTCGCCGGAAGCACCAGTGCCAGAGTTGCCAGAAGACGTTTCGATCTTCGCGCGCATTGGGCAGTCACCGAACCATTTGCGAAGGTTCGGGCAACGATAGTAAAATCTTCGAATGCCCCTTTTGTTCTAAGGTATTTGGGTCTGGTCAAGCTCTGGGTGGCCACAAGAGATCTCACATGGTACCTTCTTCCTCCTCCACTGCCAATGATTCCACCCGTCTCAAAGAAAGCTTCATAGATCTCAACTTCCCTGCTCCACCGGAAGAAGAAGACGACCTCAGCGTTGTTTCAGATGCCCAATTTGATGACTGA 975 0.521 MLVTYSFLSSQIPQNQTKPNRTKRISESIEMERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQPLPQSINTFSSNSSSRQDIEEDPHNEQQQKALVNYALRENPKKCFRLADPEFDSGAVVQDRESETESKNPTRRRSKRPRRPANSQPKARPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNTHAAVDNNNPVEDEEERSPEEIKFRRVRRKHQCQSCQKTFRSSRALGSHRTICEGSGNDSKIFECPFCSKVFGSGQALGGHKRSHMVPSSSSTANDSTRLKESFIDLNFPAPPEEEDDLSVVSDAQFDD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4989g00015 324 MobiDBLite consensus disorder prediction 306 324 - -
Vium4989g00015 324 MobiDBLite consensus disorder prediction 122 138 - -
Vium4989g00015 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Vium4989g00015 324 MobiDBLite consensus disorder prediction 58 94 - -
Vium4989g00015 324 SUPERFAMILY beta-beta-alpha zinc fingers 224 280 IPR036236 -
Vium4989g00015 324 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Vium4989g00015 324 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Vium4989g00015 324 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 31 322 IPR044303 GO:0006355
Vium4989g00015 324 Pfam C2H2-type zinc finger 258 281 - -
Vium4989g00015 324 Pfam C2H2-type zinc finger 33 58 - -
Vium4989g00015 324 Pfam C2H2-type zinc finger 226 245 - -
Vium4989g00015 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 280 IPR013087 -
Vium4989g00015 324 MobiDBLite consensus disorder prediction 274 324 - -
Vium4989g00015 324 Gene3D Classic Zinc Finger 199 282 - -
Vium4989g00015 324 MobiDBLite consensus disorder prediction 122 177 - -
Vium4989g00015 324 MobiDBLite consensus disorder prediction 280 297 - -
Vium4989g00015 324 SUPERFAMILY beta-beta-alpha zinc fingers 32 59 IPR036236 -
Vium4989g00015 324 SMART c2h2final6 34 56 IPR013087 -
Vium4989g00015 324 SMART c2h2final6 258 280 IPR013087 -
Vium4989g00015 324 SMART c2h2final6 226 246 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4989g00015 Vium-Chr4989 67067 68667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4989g00015 31 317 C2H2 Transcription Factor Family AT3G60580 34.579 4.28e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4989g00015 zf-C2H2_6 2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4989g00015 - - vun:114173003 489.96