Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4989g00002 ATGGTGTCACTGCAAGTACTGCTCGTGGTTTTCACCTCTATATTCCATGCAACAACAGTGACGTCTACACCCCACCACGACCTTACCTTTAACACATTCTCTTCCGCCAACTTCTCCAAGAACCAGCCCTGCGTCGGACCCATCGGCCACCGTCGAATCACGGTTGACATTAACGGCGGTGGCCACTACCGGTCCGTTCAAGACGCCGTCAATGCCGTCCCAGACAACAACAGAAGGAATATCCTCATTAAAATCAACGCCGGATGCTACAAAGAAAAGGTGGTGGTGCCCGTGACGATGCCGTACATAACGTTTGAGGGTGCAGGTAGAGAAGTGACGGTGATAGAATGGCATGATCGAGCCAGTGACCCTGGTCCCAGTGGACAGCAGCTTCGTACTTACAGAACCGCTTCTGTTACTGTTTTTGCCAGCTATTTTTCTGCCAGAAACATCAGCTTCAAGAACACAGCGCCTGCACCAATGCCGGGGATGCAGGGATGGCAAGCGGTGGCGTTTCGCATATCCGGCGATAAGGCATACTTCTCCGGCTGCGGGTTCTACGGCGCACAAGACACACTTTGTGACGATGCTGGCAGACATTACTTCAAGGAATGCTACATTGAAGGATCCATCGATTTCATTTTTGGCAATGGCAGGTCCATGTACAAGGATTGCTGGCTGCACTCAATAGCAAGCAGGTTTGGGTCGATAGCGGCCCAGGACAGGAAGCAGGAGGAGGAGAAGACAGGGTTCGCATTCGTAGGATGCAGGGTGACAGGTACAGGTCCACTCTATGTGGGACGAGCAATGGGACAGTATTCTAGAATCGTCTACTCCTACACATATTTCGATGACATTGTTGCACATGGTGGTTGGGATGATTGGGACCATGCAGACAATAAGAACAAGACTGTGTTCTTTGGAGTGTACAAGTGTTGGGGACCAGGAGCAGAGGCTGTTCGTGGGGTTTCACTGGCCCGAGACTTAGATTTTGAAACGGCTCATCCATTTATCAGGAAGAGTTTCGTCAATGGCAGACACTGGATTGCACCATCTGATGCTTAG 1065 0.5089 MVSLQVLLVVFTSIFHATTVTSTPHHDLTFNTFSSANFSKNQPCVGPIGHRRITVDINGGGHYRSVQDAVNAVPDNNRRNILIKINAGCYKEKVVVPVTMPYITFEGAGREVTVIEWHDRASDPGPSGQQLRTYRTASVTVFASYFSARNISFKNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCWLHSIASRFGSIAAQDRKQEEEKTGFAFVGCRVTGTGPLYVGRAMGQYSRIVYSYTYFDDIVAHGGWDDWDHADNKNKTVFFGVYKCWGPGAEAVRGVSLARDLDFETAHPFIRKSFVNGRHWIAPSDA 354
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium4989g00002 354 ProSitePatterns Pectinesterase signature 2. 207 216 IPR033131 -
Vium4989g00002 354 Gene3D - 49 353 IPR012334 -
Vium4989g00002 354 Pfam Pectinesterase 53 345 IPR000070 GO:0030599|GO:0042545
Vium4989g00002 354 FunFam Pectinesterase 49 351 - -
Vium4989g00002 354 SUPERFAMILY Pectin lyase-like 51 351 IPR011050 -
Vium4989g00002 354 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 48 350 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium4989g00002 Vium-Chr4989 12177 15026 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4989g00002 45 354 Carbohydrate Esterase AT5G47500 80.968 0.0 532