Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4985g00001 ATGGGTTTTCCGGTGGGTTACGCGGAGGTCTTCTTCCCCAACCCCTTCCTCCACACACTGGCCTTCCTCGGCCTCCTCCGAAACCTCGTCTTCTTTCTCTTCCACCTCCTCGGACTCTCCGACTTCCTCGAAACCGAGGTCGCATGGCCGGACCCCCGCATCCCCGCCACCGCCGCCGCCGCCTCCAGACCTCCCTCCGTGTCGGCGCTACTCATCAGGGACATCCTCCCCGTCGCCAAGTTTGGAGAGTCTGGGGAAAACTCCTGCGCCTGCGCCTGCGCCGTCTGTCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGCGCATGCGGAACTGCAAACACATTTTCCACCGCGCCTGCGTGGACCGTTGGATCGATCACGATCAAAAAACATGCCCTCTCTGTAGGACCCCCTTTGTGCCTGATGACATGCTTGATGATTATAATCAACGCCTCTGGGCTGCTTCTGGAATCAACGAGTTCTTCTCCGATTACACTTCTTCTTTCTGA 510 0.5843 MGFPVGYAEVFFPNPFLHTLAFLGLLRNLVFFLFHLLGLSDFLETEVAWPDPRIPATAAAASRPPSVSALLIRDILPVAKFGESGENSCACACAVCLFEFSEEEEIRRMRNCKHIFHRACVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGINEFFSDYTSSF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4985g00001 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 143 IPR013083 -
Vium4985g00001 169 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 155 - -
Vium4985g00001 169 SUPERFAMILY RING/U-box 92 143 - -
Vium4985g00001 169 ProSiteProfiles Zinc finger RING-type profile. 93 136 IPR001841 -
Vium4985g00001 169 Pfam Ring finger domain 92 136 IPR001841 -
Vium4985g00001 169 SMART ring_2 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4985g00001 Vium-Chr4985 23027 23743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4985g00001 1 168 C3H Transcription Factor Family AT1G63840 46.243 1.76e-51 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4985g00001 K16281 - gmx:100790975 302.367