Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium497g00004 ATGGGAATGGGGGAAATTGCAGTGAGTGTGGTTTCAATGTTGTTGTTGATGGTTGGGTTAACAATGGGAATGCGTTTGAGTTCGACAACGGAATGGAACGCGTTAAGGGAGCTTCGATCGTCGTTGGGGATTAGGGCAAAGTATTGGCCCATAAAAGCAGAACCGTGCGGGAACTGGACCGGAGTTCATTGCCGGAATGGTCGAGTTGTGGGTATAAACGTGTCCGGTTTGAGGAGAACCCGGTGGGGTCGCCTTAACCCAAGTTTTGAAGTGGGTTCTCTTGTGAATTTGACACTGTTGGAATCGTTTAATGCTTCTGGGTTCGTGCTTAATGGGTCTATTCCTGAGTGGTTGGGTGAGAGCATGAAGGTGTTGGATGTACTTGACCTTAGGCTTTGTTCTATTATGGGTTCGATTCCTAATTCAATTGGAGAGTTGAGTAGGTTGAAGGTTTTGGTGCTTTCAGGGAATTTTCTCACTGGTAAAATGCCTACAACGTTTGAGAATCTCACAAGACTGACTGTTCTTGATCTCTCTAATAACTCTCTTTCAGGGTATATGCCTGCTTCTGTGACTCAACTTGGGAATCTCACAAGGCTTGATCTTTCTAACAACTACTTGAGTGGGTCTGTTCCACTCAAACTGGGTGCCCTTTCTAGTTTGCAAAATTTGAACCTTTCTGGGAATTCTTTCACTGGGTCGGTTCCCTCTCAACTCGGTAACCTTTCTGAGTTGGTTGAGGTTGATCTTAGCAAAAATTTTCTGTCGGGTTCATTTTTTGGTGATTTATCTTTTTCACGGCTCTCGGCCCTCGAGGTTCTCATTCTCAGCGAGAATTTGTTTGATGGTGCTCTGCCTCATAATTTTAGCTCAACGCCCAGGTTGACCTTTCTTGATGTGTCTTGTAACAATCTCACTGGGACACTGCCGAATTTCACAAGTTGGAATGGTAGCTCTGCTGGTGTTGTGTTCAATCTGTCAAATAATATGTTCTATGGACTTCTGAACACTTCACTGTACGAGTTTAAAACTATTGATTTGTCAAGTAATTATTTGGAAGGTGAGGTGCAAGGTGGTGGTAATGTTATTCTAGACAGAAATTGCCTACAGATGACTCCAAACCAGAGGAATTTGGACGAGTGTAGAGCTTTTTATGCTGCAAGAAACTTACCCTTTTCATTCCCAGAATCTAAGTCCAGCAGAAGGGTGGTATTCATACTGGTAGGAATATTTGGTGGGCTTGGCTTTATTGCGGTGCTGACATTGGTCCTTGTGCTGGTTCTAAAACAATGTCACAATCATAGAAGCTCGGAAGTTCAAAGGGGGACCAAAGAAGAGGGACCTGTTCAGGAAGGGGAAAGCCCTATACCTCCTAAGGATGCTGATTTTGTGCCTGGCGTGGGAGAAGCATTTAGTTCTCAGCAAATTATTCGTCTAACTGACAATTTTGCTGAAGCAAATGTCATAAAGAATGGCCATTCCGGGGTCCTCTTCTTAGGAGTCTTGGAAGGTGGAGCAACTGTGGTTGTCAAAAGGATAGATTTGAATTTATTTAAGAGAGAATCATATGTCGTGGAATTGAGACTATTAAGTAAGGTTTCACATGCAAGATTGGTCCCAATCCTGGGCCACTGCTTGGACAATGAGAATGAGAAATGTATAGTTTACAAATACATGCCACATAGAGATTTGGCTACTTCTTTGCACAGAGCCAATGAGCCAGATGGTAAATTACAGTCCCTGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTAGCCTACCTACATGAGTGCAGCCCTCCCCTTGTCCACAGGGATGTCCAAGCTAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGCCAGGTTACCGCCCAAGGAGATGTTCAACAGGGAGTCATCTCAAGGGTTTTCAACAAGCCATCTACTAGTGAAGGCGATCCTGGTAAATCATCAGTGACATGCACCTACGACGTGTACTGTTTCGGGAAGATTTTACTGGAACTCATTACAGGTAACATTGAAGTGAGCAAGTCAGATGATGGCACTACAAAAGAGTGGTTAGAGAAAACCTTGCCTTACATCACTCTGTACGATAAAGAACGTGTGACTAAGATTATTGACCCACAATTGATAGTGGATGAGGACCTATTGGAAGAGGTATGGGCTATGGCAATTGTGGCTCATGCATGCTTGAATCCAAAGCCTTCCAAACGTCCTCCAATGAGACATGTCCTGAAAGCATTGGAGAATCCATTGAAGATTGTGAGAGAAGATAATAGCAGCTCAGCGAGGTTGAGATCAAACTCTTCTAGGAAATCTTGGAGCACTGCTTTCTTTGGTAGCTGGAGACACAGTTCATCAGACAGTGTTGTTGCCACAACACATGCAAACAAAGAGAGTAGCAGTGACACTAAAAAATCAAGAGTAGGCTCTCAAAGTAGTGGAAATGATCACTCATCTTCCAACAAAAGGTCATCCAATGAAATTTTCCCTGAACCATTGGAAGTGCAAGATGTGGAGGCTGGAGAGGCAGGATAA 2571 0.4364 MGMGEIAVSVVSMLLLMVGLTMGMRLSSTTEWNALRELRSSLGIRAKYWPIKAEPCGNWTGVHCRNGRVVGINVSGLRRTRWGRLNPSFEVGSLVNLTLLESFNASGFVLNGSIPEWLGESMKVLDVLDLRLCSIMGSIPNSIGELSRLKVLVLSGNFLTGKMPTTFENLTRLTVLDLSNNSLSGYMPASVTQLGNLTRLDLSNNYLSGSVPLKLGALSSLQNLNLSGNSFTGSVPSQLGNLSELVEVDLSKNFLSGSFFGDLSFSRLSALEVLILSENLFDGALPHNFSSTPRLTFLDVSCNNLTGTLPNFTSWNGSSAGVVFNLSNNMFYGLLNTSLYEFKTIDLSSNYLEGEVQGGGNVILDRNCLQMTPNQRNLDECRAFYAARNLPFSFPESKSSRRVVFILVGIFGGLGFIAVLTLVLVLVLKQCHNHRSSEVQRGTKEEGPVQEGESPIPPKDADFVPGVGEAFSSQQIIRLTDNFAEANVIKNGHSGVLFLGVLEGGATVVVKRIDLNLFKRESYVVELRLLSKVSHARLVPILGHCLDNENEKCIVYKYMPHRDLATSLHRANEPDGKLQSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDVQASSILLDDKFEVRLGSLSQVTAQGDVQQGVISRVFNKPSTSEGDPGKSSVTCTYDVYCFGKILLELITGNIEVSKSDDGTTKEWLEKTLPYITLYDKERVTKIIDPQLIVDEDLLEEVWAMAIVAHACLNPKPSKRPPMRHVLKALENPLKIVREDNSSSARLRSNSSRKSWSTAFFGSWRHSSSDSVVATTHANKESSSDTKKSRVGSQSSGNDHSSSNKRSSNEIFPEPLEVQDVEAGEAG 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium497g00004 856 SUPERFAMILY Protein kinase-like (PK-like) 466 759 IPR011009 -
Vium497g00004 856 Gene3D Ribonuclease Inhibitor 262 376 IPR032675 -
Vium497g00004 856 PRINTS Leucine-rich repeat signature 173 186 - -
Vium497g00004 856 PRINTS Leucine-rich repeat signature 194 207 - -
Vium497g00004 856 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 380 787 - -
Vium497g00004 856 MobiDBLite consensus disorder prediction 801 856 - -
Vium497g00004 856 MobiDBLite consensus disorder prediction 437 458 - -
Vium497g00004 856 FunFam Putative LRR receptor-like serine/threonine-protein kinase 559 779 - -
Vium497g00004 856 SMART LRR_typ_2 218 242 IPR003591 -
Vium497g00004 856 SMART LRR_typ_2 194 217 IPR003591 -
Vium497g00004 856 SMART LRR_typ_2 170 193 IPR003591 -
Vium497g00004 856 SMART LRR_typ_2 268 291 IPR003591 -
Vium497g00004 856 SMART LRR_typ_2 146 169 IPR003591 -
Vium497g00004 856 ProSiteProfiles Protein kinase domain profile. 483 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium497g00004 856 Gene3D Phosphorylase Kinase; domain 1 460 558 - -
Vium497g00004 856 FunFam Predicted protein 454 558 - -
Vium497g00004 856 FunFam Leucine-rich repeat receptor protein kinase EMS1 188 288 - -
Vium497g00004 856 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 91 187 - -
Vium497g00004 856 Pfam Protein tyrosine and serine/threonine kinase 488 758 IPR001245 GO:0004672|GO:0006468
Vium497g00004 856 Pfam Leucine rich repeat 147 207 IPR001611 GO:0005515
Vium497g00004 856 Gene3D Ribonuclease Inhibitor 29 187 IPR032675 -
Vium497g00004 856 Gene3D Ribonuclease Inhibitor 188 261 IPR032675 -
Vium497g00004 856 Gene3D Transferase(Phosphotransferase) domain 1 559 783 - -
Vium497g00004 856 SUPERFAMILY L domain-like 48 334 - -
Vium497g00004 856 MobiDBLite consensus disorder prediction 817 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium497g00004 Vium-Chr497 29939 34738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium497g00004 20 651 Miscellaneous Gene Families AT2G16250 47.858 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vium497g00004 PK_Tyr_Ser-Thr 6.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium497g00004 - - gmx:100798381 1311.21