Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4975g00005 ATGACTCTTGTATCTGATGCTGAAGCTCTCTCTCACTGGTTTTTCTCAGATTTGAAAGAACATCTCAGTGTGATCGTGGAAGAAGATGGCACTACCTACAAAAAGGGATGCAAGAGACCAACAGGAAGTGAGATTGGAGGCACTCCACCCAACACAAGTGTGTGTTCCTCGATTCAGCCAAGTCCACAATCTTCGTCATTCCCGAGTCCAGTGCCTTCCTACCACGCTAGTCCAACCTCTTCCTCCTTCCCCATCCCCACTTGCATTGACACAAACCCCTCTTCCTTTCTCATCCCATTCATCCGTAACATAACTTCAATTCCCGCCAACCTTCCCCCTCTCAGGATATCCAACAACGTCCCTGTCACCCCACCTCTTTCCTCTCCCCGAACCTCCAAGCGCAAGGCTGACTTCGATTTCCTCTCCAACGCTTCCTTCAGCCACCCTCTTTTCGCCACCTCCGCCCCCTCTAGTCCCTCGTGCCGCCGCCACGTTGCGACTTCCACCATCCTCGAGTGCGACGAGTCCGACACTTCCACCATCGACTCTACCTCCAGTCGTTGGGTTAGTTTTCACTATCAGACCCCCGTCGGTCCCCCTTCCCCTACTTTCAACCTCATGAAACCCGCTATGCACCAGATTGCTCCTCAGGAGGGCGTACAGTGGGGTTACGTTGCAGAGATAGGCAGAGGAGTCTCCGATTTTGAATTCGAGAATGGTAGAGTAAAGCCTTGGGAGGGTGAGAGAATACACGAGGTGGGAATGGATGATTTGGACCTTACTCTTGAATTCGGAAAATTACAAGCCATAAACACAAGTTTGGATAATAAATTGAATAGATTTGAATCAAGAAATCAGTAA 861 0.5006 MTLVSDAEALSHWFFSDLKEHLSVIVEEDGTTYKKGCKRPTGSEIGGTPPNTSVCSSIQPSPQSSSFPSPVPSYHASPTSSSFPIPTCIDTNPSSFLIPFIRNITSIPANLPPLRISNNVPVTPPLSSPRTSKRKADFDFLSNASFSHPLFATSAPSSPSCRRHVATSTILECDESDTSTIDSTSSRWVSFHYQTPVGPPSPTFNLMKPAMHQIAPQEGVQWGYVAEIGRGVSDFEFENGRVKPWEGERIHEVGMDDLDLTLEFGKLQAINTSLDNKLNRFESRNQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4975g00005 286 Pfam BES1/BZR1 plant transcription factor, N-terminal 25 91 IPR008540 -
Vium4975g00005 286 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 25 263 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vium4975g00005 286 MobiDBLite consensus disorder prediction 33 73 - -
Vium4975g00005 286 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4975g00005 Vium-Chr4975 61531 65695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4975g00005 25 269 BZR Transcription Factor Family AT1G75080 48.689 6.89e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vium4975g00005 BES1_N 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4975g00005 K14503 - gmx:100795837 358.607