Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium496g00002 ATGGAGGAGTCATGCGCGCTGTGTAAGAAGAGGGCGGCGATGTTGTGCGACGCGGACCAGGCAAAGCTGTGCTGGGAGTGCGACGGCAAAGTTCACAGCGCCAATTTCTTGGTGGCGAGGCATTCTCGTGTGCTTCTGTGTCGTTCGTGTCATTCTCTCACTCCCTGGAAAGCCTCCGGCACCAAACTCACGCCCTCCATCTCCTTTTGTCAACCTTGTCTCGGGGATCGAACTGCCAGGTTGCGGCTCTTGGTCAACGATGTTCCCCAACCACAAAAAGAAGGGGAGAATGAAGCGCCTCCACCGTCCTCTGCTTCTGCCACGTCACCACCCCGTCCTTCCGCTTTACCATTAAGAAATCACTCTTCCTCTATCGATTCTCATGATGAGACAGCGTGTTCTTCGTCACAGATGCTTGATGCTAACCAGGGCAGTAGGGATGGAACCTCTGAGCCTACTGAAGAGACGACGAAGGATGAAATACTTTGA 489 0.5378 MEESCALCKKRAAMLCDADQAKLCWECDGKVHSANFLVARHSRVLLCRSCHSLTPWKASGTKLTPSISFCQPCLGDRTARLRLLVNDVPQPQKEGENEAPPPSSASATSPPRPSALPLRNHSSSIDSHDETACSSSQMLDANQGSRDGTSEPTEETTKDEIL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium496g00002 162 SMART bboxneu5 1 46 IPR000315 GO:0008270
Vium496g00002 162 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 135 - -
Vium496g00002 162 MobiDBLite consensus disorder prediction 97 150 - -
Vium496g00002 162 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vium496g00002 162 MobiDBLite consensus disorder prediction 86 162 - -
Vium496g00002 162 CDD Bbox1_BBX-like 5 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium496g00002 Vium-Chr496 5288 5968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium496g00002 1 79 C2C2-CO-like Transcription Factor Family AT4G27310 56.962 5.85e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium496g00002 - - gmx:100818267 164.466