Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4965g00012 ATGGAATTTGATCTGAACCATGAAGTGACTGAGGTTGAGAAGAATGCATTCGGTGATAGGGAATGTGAGAAAGATGCTGGTGTCAGTTGCTGGTCCTCTTCCACTTCTTCATCTTCCAGTTCCTCTTCGGCTCGTGTGTCCTCTTCTTACCTTGAACTTTGGCATGCTTGTGCTGGCCCCCTCACTTCTCTTCCCAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCCTTTCACACCAATGGAGATTCCCTCTTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGCCGGAGTTGGAAGGGATGAATTCAGAGGGCAAAGAACTTGAGGAATTTGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTTTGCAAAACACTAACTGCCTCGGATACCAGCACCCATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCGGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGGCCTTCACAAGAGCTCGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAGTTTCGTCACATTTACCGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGTTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTTTAAGAGGTGAAAATGGTGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCTGAATCAGTTATTGGTAGCCAGAACTGCTACCCGAATGTCCTGTCTTCCGTGGCAAATGCAGTATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGGGAAAGTCATGCAGACTTTGTTGTTCCATATCAAAGATATGTCAAAAGCATCAAGAATCCAGTGAGCATTGGAGCAAGATTCAAAATGAGACTCGAAATGGATGAATCTCAAGAAAGAAGGTGTAATAGTGGCACAATGATTGCAACTAGTGATTTGGATCCTTACAGATGGCCAAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGACTAATCATCAAGATCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCTTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCAACTCATCACTGCACGAGGCAGTGGGTTGGTGGGTTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCTGGTTTTGTGTCACTCTACTACGGATGTGACACGGTAACCAAGCCACTAGGTTTTGAGATGAGTTCTCCTAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGCTACCTCTTCTGAGCTTAGTAGTGTTCACCCTTTCAGTTATGCAGGCTTTGTGGAAACTAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCTCTGACAGGAAAGATTGATTTGAATCTTGGTACCTGGGGAATGCCCAATCTGGGTTTCAACCTCCACCAGGCAACCAAACCCAACTTTCAACCTACATTGTTCCCTTATGGGGACATTCACCAAGCTGTTCAACCTAGTTTGTTTTGCTCAAAATCCACCACTTTCCAAAGAGAAAATGTCCCATTTAATAAACCATCCACTCAGGCAGGGATCATTGTAAATGAAGTTGGACAACCAGAACTCCCAAATGAGCATAAGCTGCAGGACAATCTTTCTGCTGCTGCTGCATTAGGGGCTGCAAATATGGGGGTTCCTAATGACAATAACGTCCAGGGAAAAGTAAATGCCTGCAAACTATTCGGGTTTTCTTTATCTGGGGAAACCACTGCCCAAAATTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGATTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAAAGATCCTAACAACGGATGGAGGATCCTCTACACTGATAGTGAGAATGACATAATGGTTGTGGGGGATGACCCTTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAGGTGGAAAAAATGACAATTGGGATCATCAGTGATGACACTCATAGCTGTTTGGAAGAGGCACCAATCATTACGGAGGCTTCGAAGTCTTCCTCTGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGAGTCTAA 2376 0.447 MEFDLNHEVTEVEKNAFGDRECEKDAGVSCWSSSTSSSSSSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEIPSYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQPELEGMNSEGKELEEFGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAVSTKSKFHVFYSPRESHADFVVPYQRYVKSIKNPVSIGARFKMRLEMDESQERRCNSGTMIATSDLDPYRWPKSKWRCLMVRWDEDIETNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSQLITARGSGLVGFEESVRSPKVLQGQENAGFVSLYYGCDTVTKPLGFEMSSPSHPNLGSAEVRKATSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKIDLNLGTWGMPNLGFNLHQATKPNFQPTLFPYGDIHQAVQPSLFCSKSTTFQRENVPFNKPSTQAGIIVNEVGQPELPNEHKLQDNLSAAAALGAANMGVPNDNNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLIELERLFGMEGLLKDPNNGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGIISDDTHSCLEEAPIITEASKSSSVGQPDYSPTAVRV 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4965g00012 791 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium4965g00012 791 ProSiteProfiles PB1 domain profile. 663 747 IPR000270 GO:0005515
Vium4965g00012 791 Gene3D - 162 266 IPR015300 -
Vium4965g00012 791 SUPERFAMILY DNA-binding pseudobarrel domain 156 275 IPR015300 -
Vium4965g00012 791 Pfam AUX/IAA family 654 747 IPR033389 -
Vium4965g00012 791 CDD B3_DNA 162 264 IPR003340 GO:0003677
Vium4965g00012 791 Gene3D - 327 398 - -
Vium4965g00012 791 FunFam Auxin response factor 162 266 - -
Vium4965g00012 791 FunFam Auxin response factor 658 752 - -
Vium4965g00012 791 FunFam Auxin response factor 327 400 - -
Vium4965g00012 791 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Vium4965g00012 791 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Vium4965g00012 791 SUPERFAMILY CAD & PB1 domains 666 742 - -
Vium4965g00012 791 SMART B3_2 164 266 IPR003340 GO:0003677
Vium4965g00012 791 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 752 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium4965g00012 791 Gene3D - 659 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4965g00012 Vium-Chr4965 71894 77719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4965g00012 46 791 B3 DNA Binding Superfamily AT5G60450 60.818 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium4965g00012 AUX_IAA 6.6e-07 CL0072