Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4965g00009 ATGGGAAAGAAGCAGAAAGTCGTTCTTCCGCCGGACCTTCCCCCGGAGGTTCTAGACGACGAAGTTGAGGTTTCCGACGAAGACCTCCAATTCATCAAAGAGAATCGCAACTATGCCTCCTTGCTCTCCACCTTGGACACCCATTCAATCACCAAGCATGTTACGCGGGTTGCTGATGCCAAAGACGATGCATTGGAGAAACTTTATGAGAAACGCATGCAAAAAAATTCTCTCAAGAAAGAAAAAGAAGAAACTGGTTTGCAGGTTGATCGTGTAGATGCTCTTCCAATAAAGACATTGGATGGAAAACTCCATTACCGGACAGCTTCAAAAGCCGTATCAGAAAATGATCTAAGTGAAGAGGGAACTGCAGAGGATGCCATTGCGGATGAAGGTATGGTGAAGCTAACTAAGGCTGAAAAGAGAGCCAAACTTAAGAAAATGAAGAAGGAGGCCAAAAAACAAGGGAAAGAAGTGGCTAAAGTAGAAGTGGAAGAGACACCACATGCAGCAGTGCTGGCTGAGGTAAAGGAAGATCTTACAGCTGAGGAGACATTTGAAAGCAAGAAGTGTAAACTTGCAGAATTGGGGAATGCCTTACTTACAGATCCAGAGTCCAACATTAAATTACTGAAAGAGATGGTGCAATTATCTAAAGATAACGATCATACCATTGTTAAGCTTGGACTTCTATCCCTCTTGGCAGTTTTCAAAGATATTGTCCCTGGTTATCGGATCAGGCTTCCTACTGAAAAGGAACTAGAAATGAAGGTTTCAAAGACTGTTAGAAAGATGCGTTATTATGAGTCTACTCTTCTTTCAGCATACAAGGCATATTTGCAAAGGCTGGTAGCCTTAGAGAAGAAGCCTTTATTTCAACATGTAGCAGTTCGTTGTATTTGTTCTTTGCTTGATGCAAATCCCCATTTCAACTTTCGTGAAAGTTTGTTGGATGCTACTGTCAGAAACATAGGCTCTACTGATGAGGCTATAAGGAAAGTTTGTTGTTCCACGATTAAATCACTCTTTACAAATGAGGGTAAACATGGGGGTGAGGTCACTGTTGAGGCAGTTCGATTGATTGCCGATTATGTTAAAGCTTACAATTGCCAATTGCACCCAGATTCTGTTGATGTTTTCTTGTCCCTTTCATTTAATGAGGATCTCTTGAAGTCTGGAAAGACAGAAGAGGATCAGAAATTAAAAGATAAAAAAAGTAAGAAAAGGAAACACACTGATGCATCAAATCAGTTGATGGAGAATGATAGAAAGAAAAGTAGGCAAGAATCGATTTCTAAGACAAGAAAGGAGGTTGAAGCTGATTACAAGGCTGCATCCTTTACCCTGGATGTTATGGAGAGGAAACAGATGCAAACTGAAACACTCTCTGCTGTCTTTGAGACGTACTTTCGTATTTTGAAGCATACAATGCAGTCCATCGGTGCCAGGCCTGAAGCTAACGCTGGGGCATTATCTGCTGCAGTGGAACCCCTCCCTTTGCTTGCTCCTTATCTGAAAGGACTGGCAAAATTCTCACATCTGATTGACCTTGATTTCATGGGTGATCTGATGAATCATCTGAAAGTACTTGCTTCTGGAAGTAGCAATTCAGGCAACACTTCTGACAAGTTTTCCAAATGTTTGACTGTATCGGAACGTCTCCAATGCTGCATTGTTGCCTTTAAAGTGATGAGGAACAATCTTGATGCCCTGAATGTTGATTTACAGGACTTCTTTATCCATCTTTACAATCTTATTCTTGAATACAGGCCAGGAAGAGATCAAGGAGAGGTTTTGGCAGAAGCTTTGAAGATAATGTTGTGCGATGATAAGCAACATGACATGCAAAAGACTGCTGCATTTATAAAACGATTAGCAACATTTTCACTGTGTGTTGGATCAGCAGATTCCATGGCTGCCTTGGTCACCGTAAAGCATCTCCTTCAGAAGAATGTCAAGTGCAGAAATTTGTTGGAAAATGATATTGGAGGAGGCTCTGTTTCTGGCACAATTCCTAAATATCTACCACATTCCACAGATCCCAATTTAAGTGGTGCCCTTGCCTCGGTACTTTGGGAACTCAATCTTTTGTCCAGCCATTATCATACAGCTATATCAACACTGGCCTCGGGAATTTCAAGTATGAGTACTGCACATAACCAGGTCCTTTTATCCAAGTCCTCTCCTCAACTAGCTTTTAAGGAAATGTCTCTGGACCAAGAATTATGTTTCACACAACAAACTGGCAGTATAAAGTTAAAAAACAAGAGACGAACAAATGGCCCTGCTGCATCACTTTCCATTGGTTCTACAACTGTCAAGAGTTCATTTGATGACAATGAGTTGCAGAGGAAACTTGTTTCCCATTTCATGGTTCATCATGACATCAAGGAAAATGAAAGGTTGAGAAAAGAGCTGGACAGGACTGCATTATCGCTACAGCTATATGAACAATATAAGAAACAATCAAAACCAAGGAGATGA 2484 0.4106 MGKKQKVVLPPDLPPEVLDDEVEVSDEDLQFIKENRNYASLLSTLDTHSITKHVTRVADAKDDALEKLYEKRMQKNSLKKEKEETGLQVDRVDALPIKTLDGKLHYRTASKAVSENDLSEEGTAEDAIADEGMVKLTKAEKRAKLKKMKKEAKKQGKEVAKVEVEETPHAAVLAEVKEDLTAEETFESKKCKLAELGNALLTDPESNIKLLKEMVQLSKDNDHTIVKLGLLSLLAVFKDIVPGYRIRLPTEKELEMKVSKTVRKMRYYESTLLSAYKAYLQRLVALEKKPLFQHVAVRCICSLLDANPHFNFRESLLDATVRNIGSTDEAIRKVCCSTIKSLFTNEGKHGGEVTVEAVRLIADYVKAYNCQLHPDSVDVFLSLSFNEDLLKSGKTEEDQKLKDKKSKKRKHTDASNQLMENDRKKSRQESISKTRKEVEADYKAASFTLDVMERKQMQTETLSAVFETYFRILKHTMQSIGARPEANAGALSAAVEPLPLLAPYLKGLAKFSHLIDLDFMGDLMNHLKVLASGSSNSGNTSDKFSKCLTVSERLQCCIVAFKVMRNNLDALNVDLQDFFIHLYNLILEYRPGRDQGEVLAEALKIMLCDDKQHDMQKTAAFIKRLATFSLCVGSADSMAALVTVKHLLQKNVKCRNLLENDIGGGSVSGTIPKYLPHSTDPNLSGALASVLWELNLLSSHYHTAISTLASGISSMSTAHNQVLLSKSSPQLAFKEMSLDQELCFTQQTGSIKLKNKRRTNGPAASLSIGSTTVKSSFDDNELQRKLVSHFMVHHDIKENERLRKELDRTALSLQLYEQYKKQSKPRR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4965g00009 827 Pfam CBF/Mak21 family 554 709 IPR005612 -
Vium4965g00009 827 Coils Coil 138 165 - -
Vium4965g00009 827 PANTHER NUCLEOLAR COMPLEX PROTEIN 3 3 817 IPR016903 -
Vium4965g00009 827 PIRSF Noc3 2 810 IPR016903 -
Vium4965g00009 827 MobiDBLite consensus disorder prediction 394 435 - -
Vium4965g00009 827 MobiDBLite consensus disorder prediction 410 435 - -
Vium4965g00009 827 Pfam Nucleolar complex-associated protein 189 279 IPR011501 -
Vium4965g00009 827 SUPERFAMILY ARM repeat 202 571 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4965g00009 1 806 Core DNA Replication Machinery Family AT1G79150 58.120 0.0 896
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4965g00009 K14834 - gmx:100794797 1324.3