Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4965g00007 ATGGATTTGGTACCCAGCGTTAAGGAAAAATTGAACTATTTTCGTATTAAAGAGCTCAAAGATGTGCTCACTCAGTTGCACCTTTCAAAGCAGGGGAAGAAGCAGGATCTTGTTGATCGAATATTATCTGTGCTCTCAGATGAACAAGTTTCAAAAATGTGGGCTAAGAAGAATGCTGGTGGAAAGGAACAGGTGGCAAAATTAGTTGATGATACCTATAGGAAAATGCAGATATCTGGGGCCACTGATCTAGCATCTAAGGGACAGGGGGCATCAGATAGTAGTAGTATAAAGGTGAAAGGTGAAATTGACGATTCCTTCCAGCCAGATACAAAGATTCGCTGTTTATGTGGAAGTAGATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCAAGTGTGGCAGCACATCAGTTGCGTTATTATTCCAGAGAAACCTACAGAAGGCATCCCACCAGTTCCTGATAAGTTTTATTGTGAACTATGTCGTCTCACTCGTGCTGACCCATTTTGGGTTGCAGTGGCGCACCCTTTACTTCCTGTGAAGTTAACAACAACCAGTAATCCAACTGATGGAACCAACCCTGTGCAGAGTGTGGAAAGAACATTTCAGCTTACTAGAGCAGACAAAGACTTGGTTTCCAAACCAGAAATTGATGTTGAGGCTTGGTGTATGCTCCTAAACGACAAGGTTCCGTTCAGGATGCAATGGCCGCAATATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGAGCAACTAACAGACCTGGTTCACAGTTGCTTGGAGCTAATGGTCGGGATGATGGCCCAATTATCACGCCGTACACAAAAGATGGAATTAATAAGATTTCATTAACAGGATGCGATGCTCGCATTTTTTGTCTAGGGGTTCGGATTGTTAGAAGGCGCAGCATGCAGCAGATCCTAAACTTAATTCCTAAGGAGTCTGATGGTGAGCTATTTGAAGACGCTCTTGCACGGGTGTGTCGTTGTGTTGGGGGCGGAAACGCAGATGGTGATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGTGTCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGTATTCACATGGGTTGCTTTGACCTTGAAGTTCTTGTGGAAATAAATCAACGATCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATCATCATTGATCCTTATTTCAATCGCATCACTTCTATGATGGTAAATTGTGGCGAGGAAATTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTGAAGACAAAGGGTGAAAGTGAACGCCAGGAATTAGGGAGTCTAGCACAGTGGCATCTTCCTGATGGATCCCCATGCGTTTCAGCTGATGGGGATTTCAAGAGAGTGGATACATTGGCATTGAAGCAGGTCAAACAGGAAGGGGTTTTTGACACTCCAACTGGTTTAAAACTTGGCATCAGGAAAAATCGCAATGGAGATTGGGAAGTCAGTAAACCTCAGGGCACAAACACATCTTCTGGTAATAAATTGAAAGCAATTTTTGGAAATCCCGAACAGGTTGTTATTCCAATGAGCAGCAGTGCTACTGGAAGTGGCCGGGATGGTGATGATCCTAGTGTAAATCAGGGTGGTGGCGGGCATATTGACTATTCCACTGCAAATGGCGTTGAAATGGATTCTCTGTGTCTCAATAATGTTGATTTAGCATATGACTATACTGGACATGGCACTTCTGCTCAGGTGGCTGGTGCAGAAGTTATTGTTCTTAGTGATTCTGAAGAGGATAATGATCTCTTGGTATCTCCTCCAGTTGCGTATAGGAACAACCCAAATAATGCTACAGATGGTTATTCTGTACAGCCTCCTGTAATGGTTGATTCGTATGCTGAAGATCATAATCTTGGTGGAAATTCATGCTTAGGACTCTTTCCCAATGATGATGATTTTGGGATACCTTCCCTGTGGTCTATGCCTTCTGGAAGGCAGGCTGGTCCTGGATTTCAACTATTTGGATCTGATGCCGATGTATCAGATGCATTGGTCCATCTGCAACATGGTCCCGTGAATTGCTCGTCATCACTAAATGGTTATGCACTAGCTCCTGATACTGCTTTGGGATCTGGTGGTATCTTGCAAGATTCCTCTGCTGGTCGGTTGGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTAGCATTTGGTGGTGATGATCCCTCACTTCAGATTTTTCTCCCCACTAGACCAGCAGATTCATCCATGCAGAATGAATTGAGAGATCAGGCAAATGTGGCTAATGGTGTCTGCACTGAGGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGTAATAATGGTGATGCTTCTACTCAAAATGGATTGAATTCTAGACATCAAATCCCAACCAGAGAAGTTGGCACAAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTCAGAACTGACAGGCCAGGTAGGCAAAGGTCAGATAGTCCTTTCTCATTTCCTCGCCAAAGGCGTCGCTTGTACCTTTCTATTGATTCAGATTCAGAGTAA 2634 0.4374 MDLVPSVKEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAGGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSSIKVKGEIDDSFQPDTKIRCLCGSRLETEDLVKCDDPRCQVWQHISCVIIPEKPTEGIPPVPDKFYCELCRLTRADPFWVAVAHPLLPVKLTTTSNPTDGTNPVQSVERTFQLTRADKDLVSKPEIDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVRRRSMQQILNLIPKESDGELFEDALARVCRCVGGGNADGDADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFKPCIHMGCFDLEVLVEINQRSRKWQCPICLKNYALENIIIDPYFNRITSMMVNCGEEITEVEVKPDGSWRVKTKGESERQELGSLAQWHLPDGSPCVSADGDFKRVDTLALKQVKQEGVFDTPTGLKLGIRKNRNGDWEVSKPQGTNTSSGNKLKAIFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDYSTANGVEMDSLCLNNVDLAYDYTGHGTSAQVAGAEVIVLSDSEEDNDLLVSPPVAYRNNPNNATDGYSVQPPVMVDSYAEDHNLGGNSCLGLFPNDDDFGIPSLWSMPSGRQAGPGFQLFGSDADVSDALVHLQHGPVNCSSSLNGYALAPDTALGSGGILQDSSAGRLDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSMQNELRDQANVANGVCTEEDWISLSLGGGAGGNNGDASTQNGLNSRHQIPTREVGTNTLDDTASLLLGMNDVRTDRPGRQRSDSPFSFPRQRRRLYLSIDSDSE 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4965g00007 877 SMART PHD_3 114 166 IPR001965 -
Vium4965g00007 877 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 663 - -
Vium4965g00007 877 Gene3D SAP domain 3 58 IPR036361 -
Vium4965g00007 877 SUPERFAMILY SAP domain 1 59 IPR036361 -
Vium4965g00007 877 MobiDBLite consensus disorder prediction 800 865 - -
Vium4965g00007 877 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Vium4965g00007 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 447 IPR013083 -
Vium4965g00007 877 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Vium4965g00007 877 CDD SP-RING_Siz-like 360 409 IPR031141 -
Vium4965g00007 877 MobiDBLite consensus disorder prediction 805 837 - -
Vium4965g00007 877 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Vium4965g00007 877 Pfam SAP domain 12 42 IPR003034 -
Vium4965g00007 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Vium4965g00007 877 MobiDBLite consensus disorder prediction 543 568 - -
Vium4965g00007 877 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Vium4965g00007 877 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Vium4965g00007 877 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Vium4965g00007 877 SMART sap_9 11 45 IPR003034 -
Vium4965g00007 877 Pfam PHD-finger 114 166 IPR019787 -
Vium4965g00007 877 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4965g00007 Vium-Chr4965 31861 44111 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium4965g00007 PHD 3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4965g00007 - - gmx:100793735 1599.72