Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4963g00005 ATGCAAAAAATGCCTGGGACAGGACATAAAGATGTATTGGTCAAAATTCCAGAGTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGACGGGGAAAATGATCAAGAGGAGACAATGGAGGAAGAAGAAGTTGAGTATGAAGAGGTAGAGGAGGAGGAAGAAGTAGAAGTGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGAAGAAGTAGAAGAGACTAAGCCTTCAGATGTTAAAGATGAGACAGGAGTGACAGACACTGAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCCGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGCATATTTTGTCAATCTGTGGGAGAAGTTTCAGCGGTTAGGATAATGAAGGGCAAAGAATCAGGTGAAGCAAAAGGATACGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTAAGGAGCTGAACAACACTGAACTTAAGGGAAAAAAAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATTGGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGAACAAAGTTGTTTCAGAGATTGGCCCTGGAGTCATTTCTGTGGAACTATTGAAGGACCCACAGGTTTCTGGCCGTAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAGACTTTAAACTTGGCAGTAATGCTCCAACAGTTAGCTGGGCAGATCCAAGGAATTATGAATCATCTGCAAACTCTCAGGTAAAAGCATTGTATGTAAAGAACCTTCCAGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTGTCCCTTCTGCTAAAGCTGGCCAAGAAAAGAGCAGATATGGTTTTGTTCACTTTGCTGAAAGATCAAGTGCCATGAAGGCATTGAAGAACACAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCATTAGCAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCAGCTAATCAACAGAAGTCAGCTATACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCAATAGGTGCAGGATATGGTGCTGCTGGCTTTGCGCAACCACTAATGTATGGTCCTGGACCAACCCCTCCTGGCATGACAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTATTACAACAACCAGGGTTTCAACAGCATGCCCCGGTGCTGGAATCCCAACATAGGAGGAGGGGCAGCGGTAGTTCAAGTGGTGGGAAACGCAGTAATGATAATAACAGCAATAGTGGGCTTGGCCGATATCATCCCTACTAA 1473 0.4338 MQKMPGTGHKDVLVKIPESPEGNSEPEKPTDSDEQVDFDGENDQEETMEEEEVEYEEVEEEEEVEVEEEEEEEEEEEEGEEEEVEETKPSDVKDETGVTDTEDEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLSIFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELKGKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADPRNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGAANQQKSAILPTYPPHLGYGMVGGAIGAGYGAAGFAQPLMYGPGPTPPGMTMMPMLLPDGRIGYVLQQPGFQQHAPVLESQHRRRGSGSSSGGKRSNDNNSNSGLGRYHPY 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4963g00005 490 Gene3D - 27 199 IPR012677 -
Vium4963g00005 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 281 IPR000504 GO:0003723
Vium4963g00005 490 MobiDBLite consensus disorder prediction 89 105 - -
Vium4963g00005 490 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 282 391 - -
Vium4963g00005 490 SUPERFAMILY RNA-binding domain, RBD 116 373 IPR035979 GO:0003676
Vium4963g00005 490 MobiDBLite consensus disorder prediction 462 490 - -
Vium4963g00005 490 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 200 280 - -
Vium4963g00005 490 MobiDBLite consensus disorder prediction 21 35 - -
Vium4963g00005 490 Gene3D - 200 280 IPR012677 -
Vium4963g00005 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Vium4963g00005 490 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 24 478 - -
Vium4963g00005 490 SUPERFAMILY RNA-binding domain, RBD 200 283 IPR035979 GO:0003676
Vium4963g00005 490 Gene3D - 282 388 IPR012677 -
Vium4963g00005 490 MobiDBLite consensus disorder prediction 1 105 - -
Vium4963g00005 490 SMART rrm1_1 294 367 IPR000504 GO:0003723
Vium4963g00005 490 SMART rrm1_1 120 193 IPR000504 GO:0003723
Vium4963g00005 490 SMART rrm1_1 200 277 IPR000504 GO:0003723
Vium4963g00005 490 MobiDBLite consensus disorder prediction 36 88 - -
Vium4963g00005 490 Coils Coil 41 87 - -
Vium4963g00005 490 CDD RRM_SF 121 193 - -
Vium4963g00005 490 SMART rrm2_1 294 367 IPR003954 GO:0003676
Vium4963g00005 490 SMART rrm2_1 120 193 IPR003954 GO:0003676
Vium4963g00005 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Vium4963g00005 490 MobiDBLite consensus disorder prediction 454 490 - -
Vium4963g00005 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 364 IPR000504 GO:0003723
Vium4963g00005 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 191 IPR000504 GO:0003723
Vium4963g00005 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 267 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4963g00005 Vium-Chr4963 16353 21593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4963g00005 121 435 Eukaryotic Initiation Factors Gene Family AT4G34110 24.167 2.54e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4963g00005 K13161 - gmx:100798476 651.358