Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4959g00001 ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACACCGAAGGAATCAAAAGCCTTCACAGAGACGGAGCAGGCCTTGAGTGGAGGGACAAAGATGCGAAGACCCCCTTGATTGTTGCTTGTATGAATCCTCATCTTTATAATGTTGCGAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATATCGTCCTGGTCGTCATGGCGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCTTTGAAAGTATTATTAAGTTACTTCTTGTGCATGGCGCTAATCCTTTAATACTAAATGATGATTGTCTAACTGCTCTGGAGGTTGCCAGAGCCAAAGGACATGGTTGTGCTGTTCGTACAATTGAGAGTCATCTGTGCTTGTTCTCGGGTTGGTTACGCGAGCTTCATGGA 432 0.4606 MGQGQSKDELLYQQVSYGNTEGIKSLHRDGAGLEWRDKDAKTPLIVACMNPHLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGFESIIKLLLVHGANPLILNDDCLTALEVARAKGHGCAVRTIESHLCLFSGWLRELHG 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4959g00001 144 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Vium4959g00001 144 SMART ANK_2a 39 69 IPR002110 GO:0005515
Vium4959g00001 144 SMART ANK_2a 75 104 IPR002110 GO:0005515
Vium4959g00001 144 Pfam Ankyrin repeats (many copies) 42 96 IPR002110 GO:0005515
Vium4959g00001 144 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 3 124 - -
Vium4959g00001 144 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Vium4959g00001 144 Gene3D - 2 141 IPR036770 -
Vium4959g00001 144 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Vium4959g00001 144 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Vium4959g00001 144 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4959g00001 2 121 MAP Kinase Kinase Kinase AT3G58760 33.884 1.05e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4959g00001 - - vum:124839669 301.597