Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4958g00001 ATGCAAATGATTGCTGAATCAAACATGAGACCCTGCTTCCATTGTTGCTATTCCTATACCTTTCTATTTCTTTTCCTTCTCCTTGCCCATCACACTACTTCACAGAAGACTTGCCCAAACTGTGGCTCTATGCAAGTTCCATATCCTTTGAGCACACATCCAAGTTGTGGTGATCCATACTACAAGCTTCGTTGTGATTCCCACTCTCAAAAGCTTTACTTCGATACCCTCAATGGAAGTTCCTATCTCCTTCTCCGAATCATGCCTTCAATCCAACGCATGGTGGTGGAGCCATCACCTTGGTTACCAGGTTCCTGTGTTACACAAGACATGCCCAGAAGCAACGGTATATGGTTGAACCAGTCACTTCCTTTCAATATAACTTCATCCAATACAGTGTTCCTCCTTAATTGCTCTCCACGCCTCTTGGTTTCTCCTCTCAACTGCACTTATTCTAGTGTTTGCCATCGTTACTTAGAGAGTTCTGGTCATGTTGACACAAAACGAGCGTTTGACTGTGCAAGCGGTCTTCACCCTTGTTGCACTTTTCTAGCTGGTGGAATACCTTCAGCTTACAGGATCAGGCTTCATGAGTCTGGCTGCAAAGCATTCAGAAGCATCCTTCATTTGAACCAAGACAAGCCTCCTAATCAGTGGGAGGAAGGGCTTGAAATTCAATGGGCTCTTCCACCTGAACCAGTTTGCAAGACACAAAAGGATTGCTCTGGAGACTCTACGTGTTCCCCTTCTGGTAGAAGTGGTTTATTTCGCTGTCTTTGTAATGGGGGACACCGTTGGGACCCTTTTGTCACAACGTGTGTGAAGTGTGAAAGAAAACCCAAATGGAAAACCAGTTTGGTGGTTTCAATAGGGGTTGTTGTTACCTTTTTCTCTCTTGTTGTGGTTCTGACCATCATCTCAAAGTCCCGCAAAATCTCAACCTATAGAGATAATAAAGCGAAGGAAAGAGAAGACAAACTGAAATCAAGTGCTGGGGATAAGCCTTGTAGGATGTTTCAACTGAAAGAGGTGAAGAAAGCAACAAATGATTTTTCCCATCAGAGGTTCTTGGGAAGTGGTGGCTTTGGGGAAGTTTACAAAGGTGAGCTACAAGATGGAACATTGGTGGCAGTGAAGAAAGCTAGAGTGGGAAACCTGAAAAGCACCCAACAAGTGCTTAATGAGGTTGCAATACTTTCTCAAGTCAATCACAAGAACTTGGTCAGGCTCTTGGGATGCTGTGTGGAATCTGAGCTACCATTTATGATCTACGAGTATATCTCAAATGGGACCCTCTACGACCATCTTCATGGCAAATATTGTTCGAACTTTCTAAACTGGAAAACGAGGCTCAAGGTTGCTTTTCAAACAGCAGAAGCATTGGCCTACCTGCATTCTGCTGCACACACTCCCATCTACCACAGAGATGTTAAGTCAACAAACATACTATTGGATGATGATTTCAATGCCAAGGTCTCAGATTTTGGACTCTCCAGATTGGCTAGCCCAGGACTCAGTCACGTTTCAACATGTGCTCAGGGAACGTTGGGGTACTTGGATCCTGAATACTACCGCAACTATCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAGCTTTTGACTTCACAAAAAGCGATTGACTTCAGTCGTGACGAAGATGATGTGAACCTGGCAATTCATGTGAGTCAACGTGCAAGCAATGGTACAATCATGGAATTGGTGGATCAAAGGCTTGTTTCCGTGGAGAGCTCGGGGGATAAAATGTTGACAAGCATAAAACTGTTGTTGGAGCTTGCACTTGAATGTCTGAGAGAGAAGAAAGCTGAAAGGCCAAGTATGAAGGATATTGTTCAACGCCTACTATTCATAATTAGGATTGAAGAAGGAGATTGA 1911 0.4359 MQMIAESNMRPCFHCCYSYTFLFLFLLLAHHTTSQKTCPNCGSMQVPYPLSTHPSCGDPYYKLRCDSHSQKLYFDTLNGSSYLLLRIMPSIQRMVVEPSPWLPGSCVTQDMPRSNGIWLNQSLPFNITSSNTVFLLNCSPRLLVSPLNCTYSSVCHRYLESSGHVDTKRAFDCASGLHPCCTFLAGGIPSAYRIRLHESGCKAFRSILHLNQDKPPNQWEEGLEIQWALPPEPVCKTQKDCSGDSTCSPSGRSGLFRCLCNGGHRWDPFVTTCVKCERKPKWKTSLVVSIGVVVTFFSLVVVLTIISKSRKISTYRDNKAKEREDKLKSSAGDKPCRMFQLKEVKKATNDFSHQRFLGSGGFGEVYKGELQDGTLVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESELPFMIYEYISNGTLYDHLHGKYCSNFLNWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDDFNAKVSDFGLSRLASPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFSRDEDDVNLAIHVSQRASNGTIMELVDQRLVSVESSGDKMLTSIKLLLELALECLREKKAERPSMKDIVQRLLFIIRIEEGD 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4958g00001 636 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Vium4958g00001 636 Gene3D Transferase(Phosphotransferase) domain 1 427 634 - -
Vium4958g00001 636 SUPERFAMILY Protein kinase-like (PK-like) 330 629 IPR011009 -
Vium4958g00001 636 CDD STKc_IRAK 357 626 - -
Vium4958g00001 636 FunFam Wall-associated receptor kinase-like 20 427 636 - -
Vium4958g00001 636 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 21 626 IPR044652 GO:0004672
Vium4958g00001 636 SMART serkin_6 351 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4958g00001 636 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4958g00001 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vium4958g00001 636 Gene3D Phosphorylase Kinase; domain 1 310 426 - -
Vium4958g00001 636 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 324 426 - -
Vium4958g00001 636 Pfam Protein kinase domain 353 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4958g00001 Vium-Chr4958 10904 13066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4958g00001 20 632 Receptor kinase-like Gene Family AT5G02070 46.769 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium4958g00001 Pkinase 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4958g00001 - - gmx:100804678 1111.29