Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4951g00004 ATGAGATTGAAGGAGATGCAGAAGCAACTGACCAGACTGACCGTGGTGTTACTGATGGCCTTAGAAGCCGCCAGCCAAGCCCTGCCCGGTTGCCCGTACTCATGCGGAATTGTTTCATCGATTCCGTATCCATTCGGCATCGGCAATTCAAACCTCACCGGTGAAAACTGTTTTCTGGACAAAGAATTGAATCTCACTTGCACAAACTCAACCTTGTATCGCGGTAAAGGTAACGTCCAAATTCTGAACATAACCCTCGCCGGTAAAATCGACATGCTCACCTACATCTCCGAGGTCTGCAAAAACGAATCGTTAGGTAGAGAAGAAACACACGGCTACGATGTCAGTCTCACAACACCGGCTTTTTCCATTTCTAGTGAGGACAACAAGTTCGTGACCGTAGGCTGCGATACCTACGGCTATCTCAACAGTTTCCGGAACGGCACAGAATCTTCAACGGGGTGCTTGACCAGGTGCGACACCTTAGAGAGCGTTGAAAGCATGCAGAGAAGTGGAAACTGCACCGGCATAGGGTGTTGCCAGGTCGACATTCCTCCTGGGATGAAGAACATCACTTTTCAAGCTTTCTCCTTCAACAATTTCAATTCCACTTCCTATTTCAACGACTGTGGCTTCTCCTTCGTCGTCAAAAACGGCAACTACACTTTCTCCGTCGATCATTTAAACTGCGCCCCGTTCATTATGACACCTTTTGTCATGGATTGGAGCGTTGGAAACGACACGTGCGAAGCTTCCATGCTCAGAGCAGATTATGCATGCAAGAGTCCTTATAGCGAGTGTGAGAACTCCCCGTTTGCATATGGTTACCGATGCAAATGTAAACTAGGCTTTCAGGGAAACGCTTACCTTCTCCATGGTTGCCAAGACATTCCTGAGTGTAGTAGTAACAAACACAATTGCGATAGTGAAGATCATTGTCATGAAACTCCGGGTTCTTTTGAATGTTTCTGTCCTGACGGACTTATCGGAAATGGGACAAAAGAAGGTGGAGGATGCCAAAAAAGGCAGCCGGCCGATGCTTTTATGAAGATCCGCTTTATTCATAATCATATTTTGCTAACAGGCGCAGGTGTAGGATTAATTGCTCTGTTCATAGGGATTTTTTGGTTGTACTTAATGTTTCAAAAAAGGAAAGTCTTAAAATTAAAGCAGAAGTTTTTTCAGCAGAACGGAGGAATCATTCTAAGACAACAACTCTCCACAGAAGAAGACTCATCTCAGACCACTACAATTTTCAGTGCAGAACAACTTAAGAAAGCCACCAACAATTTTGATGAGAGCTTAGTCATTGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGAGTTCTCTCAAATAACAAAGTTGTAGCTATCAAAAAGTCCAAAATAGTGGATAAGAGCCAGGTGGAACAATTCATCAATGAGGTCATTATACTGTCACAGATTAATCACAGGAATGTGGTCAAACTCTTGGGATGTTGTCTGGAAACAGAAGTTCCTTTACTAGTCTATGAATTCGTTAACAATGGCACCCTTTATGATTATTTACATAACCAAGGTCAGGGAGTCAATGTGTCATGGAAAACACGTCTAAGAATAGCTACAGAAGCAGCTGCAGCTCTATCATATTTGCACTCAGCAGCTTCCATACCCATCATCCACAGAGATGTGAAGACTGCTAACATACTCTTAGATGACACTTACACTGCCAAAGTCTCTGACTTTGGAGCTTCAAGATTGGTTCCACTTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCAGAATACATGCAATCAAGCCAGTTGACTGAAAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTTGTAGAGTTGCTAACGGGGGAGAAACCTTTCTCTTTTGACAGGGCAGAAGGGAAACGAAGTCTTACAGTTCACTTTTTGTGTAGCTTGAAAGAGGATCGTCTGTTTGATGTTATTCAGGTGGGACTTTTGGATGAAGAAAACCAGCAGGAGATTATGCAGGTTGCTATTCTTGCTGCCAGATGCTTGAGACTTATAGGGGAGGAAAGGCCTAGCATGAAGGAAGTGACAATGGAACTGGAGGGAATA 2112 0.437 MRLKEMQKQLTRLTVVLLMALEAASQALPGCPYSCGIVSSIPYPFGIGNSNLTGENCFLDKELNLTCTNSTLYRGKGNVQILNITLAGKIDMLTYISEVCKNESLGREETHGYDVSLTTPAFSISSEDNKFVTVGCDTYGYLNSFRNGTESSTGCLTRCDTLESVESMQRSGNCTGIGCCQVDIPPGMKNITFQAFSFNNFNSTSYFNDCGFSFVVKNGNYTFSVDHLNCAPFIMTPFVMDWSVGNDTCEASMLRADYACKSPYSECENSPFAYGYRCKCKLGFQGNAYLLHGCQDIPECSSNKHNCDSEDHCHETPGSFECFCPDGLIGNGTKEGGGCQKRQPADAFMKIRFIHNHILLTGAGVGLIALFIGIFWLYLMFQKRKVLKLKQKFFQQNGGIILRQQLSTEEDSSQTTTIFSAEQLKKATNNFDESLVIGKGGYGTVFKGVLSNNKVVAIKKSKIVDKSQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLYDYLHNQGQGVNVSWKTRLRIATEAAAALSYLHSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTEIATIVQGTFGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTGEKPFSFDRAEGKRSLTVHFLCSLKEDRLFDVIQVGLLDEENQQEIMQVAILAARCLRLIGEERPSMKEVTMELEGI 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4951g00004 704 SUPERFAMILY Protein kinase-like (PK-like) 411 701 IPR011009 -
Vium4951g00004 704 FunFam Wall-associated receptor kinase 2 401 506 - -
Vium4951g00004 704 ProSiteProfiles EGF-like domain profile. 296 334 IPR000742 -
Vium4951g00004 704 CDD EGF_CA 296 330 - -
Vium4951g00004 704 Pfam Wall-associated receptor kinase galacturonan-binding 31 88 IPR025287 GO:0030247
Vium4951g00004 704 Pfam Protein kinase domain 435 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4951g00004 704 Pfam EGF domain 300 333 IPR024731 -
Vium4951g00004 704 Gene3D Transferase(Phosphotransferase) domain 1 507 704 - -
Vium4951g00004 704 SMART egf_5 299 340 IPR000742 -
Vium4951g00004 704 SMART egf_5 248 295 IPR000742 -
Vium4951g00004 704 ProSiteProfiles Protein kinase domain profile. 431 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4951g00004 704 FunFam Fibrillin 2 291 335 - -
Vium4951g00004 704 Gene3D Laminin 246 339 - -
Vium4951g00004 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Vium4951g00004 704 FunFam Wall-associated receptor kinase 2 507 704 - -
Vium4951g00004 704 ProSitePatterns Protein kinases ATP-binding region signature. 437 460 IPR017441 GO:0005524
Vium4951g00004 704 CDD STKc_IRAK 437 704 - -
Vium4951g00004 704 SMART egfca_6 296 340 IPR001881 GO:0005509
Vium4951g00004 704 SMART serkin_6 431 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4951g00004 704 SUPERFAMILY EGF/Laminin 295 331 - -
Vium4951g00004 704 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 703 IPR045274 GO:0007166
Vium4951g00004 704 Gene3D Phosphorylase Kinase; domain 1 397 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4951g00004 Vium-Chr4951 56007 58929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4951g00004 13 704 Receptor kinase-like Gene Family AT1G21230 44.539 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium4951g00004 Pkinase 4.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4951g00004 - - gmx:100819535 1033.09