Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4951g00003 ATGCCACCCAAGGCAGCCGGCCGATGCTTTTACGAAGATCGTCATCGGCGCCGGTGTAGGGTTAATTGCTCTGTTCATAGGGATTTCTTGGTTGTACTTAATGTACCAGAAAAGGAAAGTCTTGAAATTAAAGCAGAAGTTTTTTCACAGAACGGAGGCATCATTCTGAGACAACAACTCTCCACAAAAGAAGACTCATCTCAGACCACTACAATTTTCAGTGCAGAACAACTTAAGAAAGCCACCAACAATTTTGATGAGAGCTTAATCATAGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGATTTCTCTCCAACAACAAAGTTGTAGCAATCAAAAAGTCCAAAATAGTGGATCAGAGCCAGGTGGAACAATTCATTAATGAGGTCATTATATTGTCACAGATTAATCACAGGAATGTGGTCAAACTCTTAGGATGTTGTCTGGAAACAGAAGTTCCTTTACTAGTCTATGAATTTGTTAACAATGGCACCCTTTTTGATTATTTACATAAGCAAGGTCAGGGAGTAAATGTGTCATGGAAAACACGTCTAAGGATAGCTACAGAAGCAGCCGCAGCTCTATCATATTTGCACTCAGCAGCTTCCATACCCATCATCCACAGAGATGTGAAGACTGCTAACATACTCTTAGATGACACTTACACTGCCAAAGTTTCTGACTTTGGAGCTTCAAGATTGGTTCCACTTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCAGAATACATGCAATCAAGCCAGTTGACTGAAAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTTGTAGAGTTGCTAACGGGGGAGAAACCTTTCTCTTTTGACAGGGCAGAAGAGAAAAGAAGTCTTACAACTCACTTTCTATGTAGATTGAAAGAGGATCGTCTGTTTGATGTTCTTCAGGTAGGACTTTTGGATGAAGAAAACCAGCAGGAGATTATGCAGGTTTCTATTCTTGCTGCTAGATGCCTGAGACTTACAGGGGAGGAAAGACCTGCCATGAAGGAATTGACAATGGAATTAGAAGGAATAAAGCTTACAAAGAAACAGCCTTGGATCAATGCGGGAAGGAACTTTGAGGAGAGTGAATACTTGCTTTATGAGGCACAAAGCTCTTATGAACATGGTGATAGTAGTAGTGGCCAACAAAATACTGGATATGATACCTTGAGAGAACTTGAACTAATTGACTTTGGTAATGGAAGATAA 1251 0.4053 MPPKAAGRCFYEDRHRRRCRVNCSVHRDFLVVLNVPEKESLEIKAEVFSQNGGIILRQQLSTKEDSSQTTTIFSAEQLKKATNNFDESLIIGKGGYGTVFKGFLSNNKVVAIKKSKIVDQSQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLFDYLHKQGQGVNVSWKTRLRIATEAAAALSYLHSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPLDQTEIATIVQGTFGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTGEKPFSFDRAEEKRSLTTHFLCRLKEDRLFDVLQVGLLDEENQQEIMQVSILAARCLRLTGEERPAMKELTMELEGIKLTKKQPWINAGRNFEESEYLLYEAQSSYEHGDSSSGQQNTGYDTLRELELIDFGNGR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4951g00003 416 SMART serkin_6 85 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4951g00003 416 SUPERFAMILY Protein kinase-like (PK-like) 65 356 IPR011009 -
Vium4951g00003 416 Pfam Domain of unknown function (DUF4441) 59 131 IPR028008 -
Vium4951g00003 416 ProSiteProfiles Protein kinase domain profile. 85 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4951g00003 416 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Vium4951g00003 416 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Vium4951g00003 416 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 362 IPR045274 GO:0007166
Vium4951g00003 416 FunFam Wall-associated receptor kinase 2 161 378 - -
Vium4951g00003 416 Pfam Protein kinase domain 89 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4951g00003 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vium4951g00003 416 FunFam Wall-associated receptor kinase 2 55 160 - -
Vium4951g00003 416 Gene3D Transferase(Phosphotransferase) domain 1 161 376 - -
Vium4951g00003 416 CDD STKc_IRAK 91 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4951g00003 Vium-Chr4951 29961 31549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4951g00003 37 416 Receptor kinase-like Gene Family AT1G21230 53.018 7.50e-136 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium4951g00003 Pkinase 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4951g00003 - - gmx:100819535 611.683