Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium494g00011 ATGGAGGATTCATTGGAGAACTGGATTTCCGATCTGTTGTCACAGGAAATGGAAGAGTATGATGCATTTGATGAGCAACAGTTCCTGAGAGAGATCCTTGAGGAGCCACAGAATTTGTCACCTGAAGGAGAGAACAACAGTCCCAGCAACAGCAGCGTGTCATTTGATGAAGCAATGGGTGACACTCTGCAGAAAAGCTACAGTTCCAACTCCATCAAGTCCTTGAAAACATCACCACCACCACCACCATCATCATCAGCAGCAGCATACCTTCTCTCTTTTGATACTTCAACTGCTGAGCCAATCGCAAAACATAAGCCTTCTACACTGCAGGGATCTTGCAGTACAAGGGGTGGTGCTGTGGTGAAAGATGGATCTCAGGTTGAACCTGTCATGGCTCAGCCAAGAAAGAGGGCTAGAAGGTCTCGTGAGACACAGCATCACATCATTGCTGAGAGGAAAAGGAGACAGGAACTCACAGGGAGCATCATAGCACTTTCAGCCACCATTCCTGGACTCAAGAGGATGGACAAGGCTTACGTACTTCGTGAAGCAGTGAATTACACAAGACAACTTCAAGAGAGGGTGAAAGAATTGGAAAATAAAAACAGTGAGAAAAGAGTAGTACATCATTCATCAACATTGGTAAGAAAATCTGAAGTTTGCTCAAAGAAAAGCTTGAGCAATAGCAGTGAAAGCAACAAAGAATCACTGTTTGAGGTTGAAGCAAGAGTCCTAGATGAGGAAATACTGATTGGAATCCATTGTGAGAAGCAAAAGGACACAGTCTGCAACATACTAGCCTTTCTTGAAAAGCTGCATCTCTCTCCAACCAGTAGCAGTGTATTACCATTTGGCACTTGTACTCTTATAATCCACATCATTGCTCAGATGGATGAGGAATGCAGAATGAACATGGATGAGTTAGTGAAGAATCTGAGAGAATATCTGTTGAATGTGTATGACATGCAGCAAGTTAGTTTGTGA 987 0.4336 MEDSLENWISDLLSQEMEEYDAFDEQQFLREILEEPQNLSPEGENNSPSNSSVSFDEAMGDTLQKSYSSNSIKSLKTSPPPPPSSSAAAYLLSFDTSTAEPIAKHKPSTLQGSCSTRGGAVVKDGSQVEPVMAQPRKRARRSRETQHHIIAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENKNSEKRVVHHSSTLVRKSEVCSKKSLSNSSESNKESLFEVEARVLDEEILIGIHCEKQKDTVCNILAFLEKLHLSPTSSSVLPFGTCTLIIHIIAQMDEECRMNMDELVKNLREYLLNVYDMQQVSL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium494g00011 328 PANTHER BHLH TRANSCRIPTION FACTOR 5 317 - -
Vium494g00011 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 210 IPR036638 GO:0046983
Vium494g00011 328 MobiDBLite consensus disorder prediction 134 150 - -
Vium494g00011 328 MobiDBLite consensus disorder prediction 39 75 - -
Vium494g00011 328 Coils Coil 182 209 - -
Vium494g00011 328 Gene3D - 134 208 IPR036638 GO:0046983
Vium494g00011 328 SMART finulus 149 198 IPR011598 GO:0046983
Vium494g00011 328 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
Vium494g00011 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Vium494g00011 328 MobiDBLite consensus disorder prediction 104 150 - -
Vium494g00011 328 MobiDBLite consensus disorder prediction 23 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium494g00011 Vium-Chr494 78696 81310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium494g00011 8 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.086 4.37e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium494g00011 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium494g00011 - - gmx:100818334 354.755