Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium494g00010 ATGGAGGATTCATTGGAGAACTGGATTTCCGATCTGGAAATGGAAGAGTATGATGCATTTGATGAGCAACAGTTCCTGAGAGAGATCCTTGAGGAGCCACAGAATTTGTCACCTGAAGGAGAGAACAACAGTCCCAGCAACAGCAGCGTGTCATTTGATGAAGCAATGGGTGACACTCTGCAGAAAAGCTACAGTTCCAACTCCATCAAGTCCTTGAAAACATCACCACCACCACCACCATCATCATCAGCAGCAGCATACCTTCTCTCTTTTGATACTTCAACTGCTGAGCCAATCGCAAAACATAAGCCTTCTACACTGCAGGGATCTTGCAGTACAAGGGGTGGTGCTGTGGTGAAAGATGGATCTCAGGTTGAACCTGTCATGGCTCAGCCAAGAAAGAGGGCTAGAAGGTCTCGTGAGACACAGCATCACATCATTGCTGAGAGGAAAAGGAGACAGGAACTCACAGGGAGCATCATAGCACTTTCAGCCACCATTCCTGGACTCAAGAGGATGGACAAGGCTTACGTACTTCGTGAAGCAGTGAATTACACAAGACAACTTCAAGAGAGGGTGAAAGAATTGGAAAATAAAAACAGTGAGAAAAGAGTAGTACATCATTCATCAACATTGGTAAGAAAATCTGAAGTTTGCTCAAAGAAAAGCTTGAGCAATAGCAGTGAAAGCAACAAAGAATCACTGTTTGAGGTTGAAGCAAGAGTCCTAGATGAGGAAATACTGATTGGAATCCATTGTGAGAAGCAAAAGGACACAGTCTGCAACATACTAGCCTTTCTTGAAAAGCTGCATCTCTCTCCAACCAGTAGCAGTGTATTACCATTTGGCACTTGTACTCTTATAATCCACATCATTGCTCAGATGGATGAGGAATGCAGAATGAACATGGATGAGTTAGTGAAGAATCTGAGAGAATATCTGTTGAATGTGTATGACATGCAGCAAGTTAGTTTGTGA 978 0.4335 MEDSLENWISDLEMEEYDAFDEQQFLREILEEPQNLSPEGENNSPSNSSVSFDEAMGDTLQKSYSSNSIKSLKTSPPPPPSSSAAAYLLSFDTSTAEPIAKHKPSTLQGSCSTRGGAVVKDGSQVEPVMAQPRKRARRSRETQHHIIAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENKNSEKRVVHHSSTLVRKSEVCSKKSLSNSSESNKESLFEVEARVLDEEILIGIHCEKQKDTVCNILAFLEKLHLSPTSSSVLPFGTCTLIIHIIAQMDEECRMNMDELVKNLREYLLNVYDMQQVSL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium494g00010 325 Coils Coil 179 206 - -
Vium494g00010 325 Gene3D - 131 205 IPR036638 GO:0046983
Vium494g00010 325 SMART finulus 146 195 IPR011598 GO:0046983
Vium494g00010 325 MobiDBLite consensus disorder prediction 23 85 - -
Vium494g00010 325 MobiDBLite consensus disorder prediction 101 146 - -
Vium494g00010 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 207 IPR036638 GO:0046983
Vium494g00010 325 PANTHER BHLH TRANSCRIPTION FACTOR 19 314 - -
Vium494g00010 325 MobiDBLite consensus disorder prediction 131 146 - -
Vium494g00010 325 Pfam Helix-loop-helix DNA-binding domain 143 190 IPR011598 GO:0046983
Vium494g00010 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Vium494g00010 325 MobiDBLite consensus disorder prediction 36 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium494g00010 Vium-Chr494 78696 81312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium494g00010 8 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.111 5.81e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium494g00010 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium494g00010 - - gmx:100818334 360.147