Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium494g00009 ATGGAGGATTCATGGCATAGCTTGGTTTCTCAATGGGAAATGGATGATTTCTTCAACCAAAGCCACACGATCCATTGCAATGAAGAAGAGTCTCCGAAAAACATGATTGTTTTCTCTCACGAAAGCAATATTCCATCTTCTTCCTCCCTCCAAAGTAACTTGAACTCGAAAACTTCATCAATTTCTGCTGGCCATGTTTTGGGTTTTGATAACCCTAATTCTGAAGCACATCAGAACCACTCTTCCAAAAGCACGAAACAGAGCCAAAACGCGATTCCAAGAGCAAACAGACAACATCACATATTGGCTGAGAGAAAAAGGAGAGAAGAATTGACGAAGAACATCGTAGAACTTTCCGCCATCATTCCTGGGTTAAAAAAGAGAGACAAGGGCAGTGTGGTACTTGAAGCTGTGGATTATGTGAAACGACTTAAAGAACGAGTGAAAGAGCTGGAAAATAAAAAGAGTGAAATTATGAATTCAAGAAGCCTCACCAAGAAACCAACAAGTGTGGAAGAAGAACTTCCAGAAATGAAGATTTCCGTTTCAGACAGGGAAGTGCTTATAGGAATTTTTTGTCACAATCCAAGCAATACTTTAGTCAAAGTGTTGTCGTTGCTCGATAATCTTCATCTTTCTACGAGATGTTCTAGTGTGTTGCCATTTGGAACTTCAACATTTAAGGTCACTATTATTGCTAAGATGAATGACGAATATAGCATGACCATCGATGACCTAATAAAAGAAGTTGGAGGACGCTTATTGAAGTCACACAAGGTGGTAAAGTGA 789 0.3942 MEDSWHSLVSQWEMDDFFNQSHTIHCNEEESPKNMIVFSHESNIPSSSSLQSNLNSKTSSISAGHVLGFDNPNSEAHQNHSSKSTKQSQNAIPRANRQHHILAERKRREELTKNIVELSAIIPGLKKRDKGSVVLEAVDYVKRLKERVKELENKKSEIMNSRSLTKKPTSVEEELPEMKISVSDREVLIGIFCHNPSNTLVKVLSLLDNLHLSTRCSSVLPFGTSTFKVTIIAKMNDEYSMTIDDLIKEVGGRLLKSHKVVK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium494g00009 262 MobiDBLite consensus disorder prediction 62 96 - -
Vium494g00009 262 Gene3D - 93 167 IPR036638 GO:0046983
Vium494g00009 262 Pfam Helix-loop-helix DNA-binding domain 97 144 IPR011598 GO:0046983
Vium494g00009 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 144 IPR011598 GO:0046983
Vium494g00009 262 PANTHER BHLH TRANSCRIPTION FACTOR 14 250 - -
Vium494g00009 262 Coils Coil 134 161 - -
Vium494g00009 262 MobiDBLite consensus disorder prediction 62 95 - -
Vium494g00009 262 SMART finulus 101 150 IPR011598 GO:0046983
Vium494g00009 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 161 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium494g00009 Vium-Chr494 71766 74711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium494g00009 75 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.109 2.22e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium494g00009 HLH 6.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium494g00009 - - gmx:100807144 238.039