Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium494g00007 ATGGTTGAGGGTAGCCAAGTTTTCAGTTCTCATGTTATTGTTAGTTTCTTTTTGCTGGTTTTCTGTGGCATGGTTTGTGGGACTGATAGTGATATATCCTGCTTGAGAAGTGTAAAGGCAGCATTTGAGGACCCTTTCAAGTATTTGCAATCCTGGGATTTCAGCAACAGAACAGAAGGGAGTATATGCAAGTTCACCGGGGTTGAGTGTTGGCACCCTGATGAGAACAGGGTCTTGAATCTGAAACTGTCAAACATGGGACTCAAGGGTGAGTTTCCACGCGGCATTAAAAATTGCTCAAGCATGACAGGATTAGATTTTTCACTTAACAGACTCTCTAACACCATTCCAGCAGATATATCCACACTTCTTACCTATGCGACAACCATTGATCTATCCTCAAATGATTTTACCGGGGAAATACCTGCTTCCCTCTCAAACTGTACCTATCTTAATACTCTCAGACTTGATCAAAACCAACTCTCTGGTCAAATTCCTTCAAACTTGAGCCAGCTCCCGCGGCTTAAGGCTTTTAGTGTTTCCAATAATCTTTTGACAGGGCCGGTTCCAGCCTTTAAAGCAGGTGTGGCTGATGCAGGAAGTTATGCAAATAATTCTGGCCTGTGTGGTGGTCCCTTGGATGCTTGCCATGCCAACTCTGCAAAGAGTAACACTGCTGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACAGTTGCAGCATTAGGTTTGGGCATTGGAATGTTCTTCTACGTGCGCCGTATTTCTTATAGGAAGAAGGAAGAGGACCCTGAAGGAAACAAGTGGGCAAGAAGTCTAAAGGGAACCAAAACAATAAAGGTTTCTATGTTTGAGAAGGAAATTTCAAAAATGAACTTGAATGATCTCATGAAGGCAACTAATAACTTCAGTAATAGCAATATTATTGGGTCTGGAAGATCAGGAACTGTTTACAAAGCTGTCCTTCCTGATGGCACATCACTCATGGTTAAGAGGTTGCAGGAATCTCAACACTCAGAGAAAGAATTTATGTCTGAGATGGCTATACTAGGGACTGTCAAACATCGTAACCTGGTTCCTCTTTTAGGTTTTTGTCTGGCTAAAAAGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGTACCCTCCATGATCAACTTCATCCTGAGGCAGGCGTGTGCACCATGGATTGGGCTGTAAGGCTCAAAATTGCAATTGGCGCAGCCAAAGGGTTGGCATGGCTTCATCATAGCTGCAATCCCCGTATTCTCCATCGAAACATAAGCTCTAAGTGCATCTTGTTGGATGCTGATTTTGAGCCCAAAATTTCTGATTTTGGTCTTGCTAGATTGATGAACCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTGGGTTATGTTGCTCCTGAATATGCAAAAACTTTGGTGGCTACTCCTAAAGGGGATATTTATAGCTTTGGGACCGTGCTTCTTGAGCTGGTGACAGGTGAAAGACCTACTCATGTGGCTAAAGCTCCTGAAACTTTCAAGGGAAATTTGGTTGAATGGATTTCACAGCAATCTGGCAATGCAAAACTCCATGCTGTCATTGATGAATCATTACTTGGGAATGGAGTAGACCAGGAAGTTTTCCAATTTCTGAAGGTTGCATGCAATTGTGTTTCAGAAATGCCAAAGGAGAGGCCTACCATGTTTGAAGTATACCAGCTTCTAAGAGCCATTGGCTTGAATTATAATTTCACAGTTGAGGATGAGATAATGCTGCCTGTAGACTCTGGTGACGCTGAGAACTTAGAAGAACTTATTGTAGCTCGAGAAGGACATAACTGA 1845 0.426 MVEGSQVFSSHVIVSFFLLVFCGMVCGTDSDISCLRSVKAAFEDPFKYLQSWDFSNRTEGSICKFTGVECWHPDENRVLNLKLSNMGLKGEFPRGIKNCSSMTGLDFSLNRLSNTIPADISTLLTYATTIDLSSNDFTGEIPASLSNCTYLNTLRLDQNQLSGQIPSNLSQLPRLKAFSVSNNLLTGPVPAFKAGVADAGSYANNSGLCGGPLDACHANSAKSNTAVIAGAAVGGVTVAALGLGIGMFFYVRRISYRKKEEDPEGNKWARSLKGTKTIKVSMFEKEISKMNLNDLMKATNNFSNSNIIGSGRSGTVYKAVLPDGTSLMVKRLQESQHSEKEFMSEMAILGTVKHRNLVPLLGFCLAKKERLLVYKNMPNGTLHDQLHPEAGVCTMDWAVRLKIAIGAAKGLAWLHHSCNPRILHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYAKTLVATPKGDIYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWISQQSGNAKLHAVIDESLLGNGVDQEVFQFLKVACNCVSEMPKERPTMFEVYQLLRAIGLNYNFTVEDEIMLPVDSGDAENLEELIVAREGHN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium494g00007 614 FunFam Leucine-rich repeat receptor-like protein kinase 377 586 - -
Vium494g00007 614 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Vium494g00007 614 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 263 376 - -
Vium494g00007 614 Gene3D Phosphorylase Kinase; domain 1 263 375 - -
Vium494g00007 614 Gene3D Ribonuclease Inhibitor 28 218 IPR032675 -
Vium494g00007 614 SUPERFAMILY L domain-like 29 194 - -
Vium494g00007 614 SUPERFAMILY Protein kinase-like (PK-like) 279 577 IPR011009 -
Vium494g00007 614 ProSiteProfiles Protein kinase domain profile. 302 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium494g00007 614 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 47 191 - -
Vium494g00007 614 FunFam Leucine-rich repeat receptor-like protein kinase 28 191 - -
Vium494g00007 614 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium494g00007 614 Gene3D Transferase(Phosphotransferase) domain 1 377 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium494g00007 Vium-Chr494 48247 50849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium494g00007 18 590 Receptor kinase-like Gene Family AT3G28450 45.250 4.63e-179 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vium494g00007 Pkinase 1.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium494g00007 - - gmx:100817267 1057.36