Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium494g00001 ATGCAACACTCTTTTCATCTCTTCATAAATTCAACCTTTTCACACACTCTTCTTTTCTTCTCTGCACCAAAAGTCCCCCACTGCCATTACTACATATCTTACTTTCTCTCTCTCTCTCACTCACCATTCACTTCACACAACAACCACAACACACAGAATCACAGAATGCAAGCGTCCTCCTCTTTCTTCTTGTTGTTGCTGTTTTTGTCATGTGCATTGTCTTCTTCACAACTCTTGTTGTTCAACAGAAGGGTCCTCCATGAACCCTTTATTCCTTTGACCTCTCTTCCTCCTTCTGAACCACCAAAACCACCACCTCCTCATCCTTCTCCTTCAACCTCAAAACCAAAACCCAAATACCCTTCATCATCCATCATCCCCACCACCACCATTTCCTCCACACCAGTACCAACAACCACTACAACCACAACACCAACCCCATTAACAACACAATCACCATTTTTCCCGTTATACCCCTCTTCTCCTCCTCCTCCTTCTCCGATCACCTTTGCCTCCTTTCCTGCCAATATCTCCTCCCTCATTCTCCCTCACTCCCCAAAACCCAATTCCTCCCCCAACAAACTTCTTCCCGTCGCTCTCGCAGCCGTTGTCGCTGCCGCACTCGCCGTCTCTATCTCTGCCTTCGTCTGTTACCGCCGCCGACGGAACCCTCCCCCCTCCCCAGCAGGCAAAGTTCTCCGTTCCAACACTGACCTCCTCCCACTCCGCCGCAATGCCGAAACTTCCGTCGAAACACGCAAGCTCCGGCACACGTCCTCCACAAGCTCCGAGTTTCTCTACCTCGGCACTGTCGCGAACTCTCACATGATCGAGGACGCCGACGTTGGCGACGGAGACCGGAAAATGGAATCCCCGGAGCTCCGGCCACTTCCGCCGCTCGCGCGACAGGCTTCAGTTCCGCCTCCTCCTCCACCCCGCGACGAGGCGGGTTTCACGACAGCGGAGGAGGACGAAGACGAATTTTACTCGCCGAGAGGTTCGTCGTTGGGAGGCTCCGGTGGAACCGGATCAGTTTCCAGGCGAGTGTTCGCCGTCGATCGAAGCGTGACCTCTAGCTCGTGTTCTTCCTCTTCTTCGGGATCGCCGGAAAGGTCTGTCCTGAACATGCCGCCGCCGGCGAGTTCGGGTTATCGGAACACGCTGCCGAAATCACCGGAAAATTACAACCACCAGCACGTGCATTCTTCTTCTTCGATGTGCTCAACACCAGATAGGGTTTTTGCTGAACGTGATAACGAGGTGTTAAGTGCATGTGTACATGCACATGCAGCACCATCATCATCGCATGAGGGAACGTTGGAGAAAAATGAAAATACATTACCCTCATCTCCACCACCGAGATTATCTGATGCTTCTTCGTCTTCCGCTTTTTCTCTTCCCTCTTCGCCGGAGAAGGTGACACGTCATCATACTTTCGATCAGTCTCCGAGAATGTCGAGTGTTTCCGACGGACTGATGTTACCTGGCTTGTCATCGGTTCCTTTATCACCCGCCCTGCTTTCATCGCCGGAAACCGAAAGAGGAGCTTTCAGTGAATTGAGAACAGGTTCTTTTGGTGCGCAGAGAAAACACTGGAGCATTCCAGCACTGTCAATGCCAATAACAACACCGTTTGATGAAATTGGAACCGTTCCAGGTCCTCCACCTTTGCCACAGAGGAAGCACTGGGAGATTCCAGGCCCTGCTCCGCCACCACCACCGCCGTTGCCACGGCAGCGGAAGCAGTGGGGAGTTCCAGCGCCGGGTCCGTCAACACCGGTTGGTCAACCGGTGTCAAGGCCACCAGAATTGGTGCCTCCTTCGAGGCCTTTTGTGTTGCAAAACCAAGCAACCAATGTTGAGTTGCCGGTGAGTTTGAGGGAAATTGAAGAGACTGGTAAACCAAAACTGAAGGCCCTGCATTGGGACAAAGTGAGAACAAGCTCTGAACGTGAAATGGTGTGGGATCAGATGAAGTCCAGTTCGTTTAAATTGAATGAGAAAATGATTGAAACGTTGTTTGTAGTGAACACACCAAACCCTAAGGCCAAGGATGCAACTACAAACTCTATTTCTCACCTGCCAAATCAGGAGGAAAGAGTACTCGATCCTAAAAAGTCTCAAAATATTTGTATCTTGCTGAAAGCGCTTAACGTCACTTTAGAAGAAGTGTGTGAAGCACTTTTACAAGGTACTACTGATACACTTGGAACAGAATTACTCGAAAGCTTGTTAAGAATGGCACCAAGCAAGGAAGAAGAACGTAAGTTGAGGGAACATAAAGATGACTCACCAACCAAGCTTGGTCTTGCTGAGAAATTTTTGAAGGCAGTGCTTGATGTACCTTTCGCATTTAAAAGGATTGAGGCAATGCTTTTCATAGCCAGTTTTGAGTCTGAAGTGGATTATCTTAGGACATCCTTTCAAACACTAGAGGCTGCCTGTGAAGAGCTGCGACATTCTAGAATGTTCTTGAAGCTGTTGGAGGCTGTACTTAAAACTGGGAACCGCATGAACGTGGGGACCAACCGTGGGGATGCAGAGGCATTCAAACTTGATACTCTTCTGAAGCTGGCTGATGTCAAAGGCGCAGATGGAAAAACCACTCTACTGCATTTTGTTGTACAAGAAATAATTCGAACCGAAGGTGCACGTCTCTTTGACACTAATCAAACTCCAAGCTCTACTACTTTGAACGAAGATGTCAAGTGTAGGAGGCTTGGTCTACAAGTTGTATCAAGCCTGAGTTCAGAGCTATCAAATGTGAAGAAGGCTGCTACTATGGATTCCGAAGTTCTCAGCAGTGATGTGTTAAAGCTTTCCAAAGGAATTGCAAACATAGCAGAGGTTGTGCGGTTAAACCAAACAATGGGGTCAGATGAAAGCAGTCAGAATTTTACTGAATCAGTGAAGAAATTCATCAGAATGGCTGAGGAAGAAATTCCAAAAATTCAAGCCCAAGAAAGTGTTGCTTCCTCCCTTGTGAAGGAGATTACAGAGTATTTTCATGGGAACTTGTCAAAAGAAGAAGCTCATCCATTCAGGCTCTTCATGGTTGTAAGAGACTTTCTAGCAGTTCTTGACCGTGTCTGCAAAGAAGTTGGAATGATAAATGAGAGAACCATGGTTAGTTCAGCTCATAAATTCCCTGTGCCAGTTAATCCAATGCTTCCACAACCCCTTCCTGGTTTACATGAGAGCCACCAATATAATAATAATAACAATACCTCTTCAGATGATGAAGCTCCATCACCTTAG 3258 0.48 MQHSFHLFINSTFSHTLLFFSAPKVPHCHYYISYFLSLSHSPFTSHNNHNTQNHRMQASSSFFLLLLFLSCALSSSQLLLFNRRVLHEPFIPLTSLPPSEPPKPPPPHPSPSTSKPKPKYPSSSIIPTTTISSTPVPTTTTTTTPTPLTTQSPFFPLYPSSPPPPSPITFASFPANISSLILPHSPKPNSSPNKLLPVALAAVVAAALAVSISAFVCYRRRRNPPPSPAGKVLRSNTDLLPLRRNAETSVETRKLRHTSSTSSEFLYLGTVANSHMIEDADVGDGDRKMESPELRPLPPLARQASVPPPPPPRDEAGFTTAEEDEDEFYSPRGSSLGGSGGTGSVSRRVFAVDRSVTSSSCSSSSSGSPERSVLNMPPPASSGYRNTLPKSPENYNHQHVHSSSSMCSTPDRVFAERDNEVLSACVHAHAAPSSSHEGTLEKNENTLPSSPPPRLSDASSSSAFSLPSSPEKVTRHHTFDQSPRMSSVSDGLMLPGLSSVPLSPALLSSPETERGAFSELRTGSFGAQRKHWSIPALSMPITTPFDEIGTVPGPPPLPQRKHWEIPGPAPPPPPPLPRQRKQWGVPAPGPSTPVGQPVSRPPELVPPSRPFVLQNQATNVELPVSLREIEETGKPKLKALHWDKVRTSSEREMVWDQMKSSSFKLNEKMIETLFVVNTPNPKAKDATTNSISHLPNQEERVLDPKKSQNICILLKALNVTLEEVCEALLQGTTDTLGTELLESLLRMAPSKEEERKLREHKDDSPTKLGLAEKFLKAVLDVPFAFKRIEAMLFIASFESEVDYLRTSFQTLEAACEELRHSRMFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLFDTNQTPSSTTLNEDVKCRRLGLQVVSSLSSELSNVKKAATMDSEVLSSDVLKLSKGIANIAEVVRLNQTMGSDESSQNFTESVKKFIRMAEEEIPKIQAQESVASSLVKEITEYFHGNLSKEEAHPFRLFMVVRDFLAVLDRVCKEVGMINERTMVSSAHKFPVPVNPMLPQPLPGLHESHQYNNNNNTSSDDEAPSP 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium494g00001 1085 SMART it6_source 627 1042 IPR015425 -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 1065 1085 - -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 96 151 - -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 351 372 - -
Vium494g00001 1085 PANTHER FORMIN-RELATED 62 1067 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium494g00001 1085 MobiDBLite consensus disorder prediction 547 602 - -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 379 410 - -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 549 581 - -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 96 116 - -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 436 472 - -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 426 493 - -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 301 315 - -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 1049 1085 - -
Vium494g00001 1085 Gene3D Formin, FH2 domain 634 1048 IPR042201 -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 117 151 - -
Vium494g00001 1085 SUPERFAMILY Formin homology 2 domain (FH2 domain) 640 1039 - -
Vium494g00001 1085 ProSiteProfiles Formin homology-2 (FH2) domain profile. 627 1053 IPR015425 -
Vium494g00001 1085 Pfam Formin Homology 2 Domain 631 1027 IPR015425 -
Vium494g00001 1085 MobiDBLite consensus disorder prediction 281 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium494g00001 Vium-Chr494 1897 6193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium494g00001 172 274 FH2 protein (formin) Gene Family AT2G43800 33.333 4.10e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium494g00001 - - vun:114185313 1599.72